Download or read book Genetic Diversity of Wheat Wild Relative Aegilops Tauschii for Wheat Improvement written by Narinder Singh and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat is perhaps the most important component in human diet introduced since the conception of modern agriculture, which provides about 20% of the daily protein and calorie intake to billions of people. Adaptable to wide range of climates, wheat is grown worldwide, lending it the potential to mitigate the imminent risk of food security for future population of 9.5 billion people. For developing improved crop varieties in the future, genetic diversity is a key factor in plant breeding. Constraints in wheat evolution and artificial selection practices have resulted in erosion of this ingredient in elite germplasm. However, wheat wild relatives, such as Ae. tauschii, D-genome donor of wheat, are a storehouse for unexploited genetic diversity that can be used for improving wheat for disease and insect resistance, yield, quality, and tolerance to abiotic stresses. More than 1700 genebanks around the world hold over 7 million accessions of these wild relatives. These genebanks are expensive to maintain, therefore, efficient curation is necessary. We developed and implemented a protocol to identify duplicate accessions using genomic tools. Implementing this approach with three genebanks, we identified over 50% duplicated accessions across genebanks. There are over a million Triticeae accessions held collectively, and it is likely as more number of genebanks are tested, there will be decreasing number of unique accessions. Selecting and utilizing the wild genetic diversity is no easy task. Historically, breeders and geneticists have chosen the accessions primarily based on associated phenotypic data. Unless focusing on a targeted trait, this practice is imperfect in capturing the genetic diversity with some other limitations, such as confounding phenotypic data with the testing environment. Utilizing next-generation sequencing methods, we selected a MiniCore consisting of only 40 accessions out of 574 capturing more than 95% of the allelic diversity. This MiniCore will facilitate the use of genetic diversity present in Ae. tauschii for wheat improvement including resistance to leaf rust, stem rust, Hessian fly, and tolerance to abiotic stresses. Hessian fly is an important insect pest of wheat worldwide. Out of 34 known resistance genes, only six have been mapped on the D sub-genome. With swift HF evolution, we need to rapidly map and deploy the resistance genes. Some of the undefeated HF resistance genes, such as H26 and H32, were introgressed from Ae. tauschii. In this study, we mapped three previously known genes, and a new gene from Ae. tauschii accession KU2147. Genes were mapped on chromosomes 6B, 3D, and 6D. Further, identification and cloning of resistance genes will enhance our understanding about its function and mode of action. In conclusion, wild wheat relatives are genetically diverse species, and utilizing the novel genetic diversity in Ae. tauschii will be fruitful for wheat improvement in the wake of climate change to ensure future food security to expected 2 billion newcomers by 2050.
Download or read book Aegilops Promising Genesources to Improve Agronomical and Quality Traits of Wheat written by Peter Shewry and published by Frontiers Media SA. This book was released on 2020-09-02 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.
Download or read book Genetic Basis of Eco geographic Adaptation in Wild Relatives for Wheat Improvement written by Elina Adhikari and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat production has been improved significantly through plant breeding and agronomic practices. Nonetheless, the yield drive came with the cost of reduced genetic diversity in elite varieties. Bottleneck due to domestication, complexity in gene sharing due to polyploidization, loss of genetic diversity during hybridization, and years of selective breeding during commercialization narrowed the genetic base of the hexaploid wheat as compared to its wild counterparts. Availability of ancestral genomes in the wild relatives provides a fallback option for finding new allelic diversity required in wheat breeding. The wheat wild relatives are adapted to a wide range of climatic conditions. However, only a small fraction of the existing genetic diversity has been used in improving the adaptive potential of the hexaploid wheat. In my dissertation, I study how wheat evolved to adapt to its local climate using two immediate progenitors of wheat, Ae. tauschii and wild emmer wheat. In my first study, I used wild emmer, a tetraploid wild relative of the hexaploid wheat to study the genetics of clinal adaptation in wild emmer. The major objective of this study is to understand the role of geography and climate in shaping the allele frequency distributions indicating clinal adaptation. This study identifies the genomic signatures of adaptation and uses them for predicting adaptive potential. I use 444 geo-referenced wild emmer accessions collected throughout the wide climatic range of Israel. Genotyping is carried out using the 90K iSelect SNP array (90K) and the sequence-based genotyping (GBS) and is mapped to a wild emmer reference genome. The GBS and 90 K respectively identify 341,228 SNPs and 26,548 SNPs, among which, 26,697 SNPs and 9,175 SNPs are retained for respective genotyping platforms. The analysis of population stratification revealed four genetically distinct groups of wild emmer accessions largely reflecting their geographic distribution. Pearson correlation among 103 historical bioclimatic variables identifies twenty-five unique climatic variables that are noncollinear (Person correlation 0.85). Partitioning of genetic variance shows that geography and climate together explain 44% of genetic variations among emmer accessions with climatic factors accounting for 10% of the SNP variance. The eco-geographic adaptation alleles identified through environmental association scans of historical on-site climatic data improved the prediction accuracy of the heading date by 9%. This research finds that geography and climate play a vital role in shaping the genetic diversity of the wild emmer wheat. In my second study, I examine the environmental drivers guiding the clinal adaptation in Ae. tauschii, one of the diploid wild relative of wheat. A genome-wide environmental scan is used to identify the climate associated alleles (CAA) and select a representative set of 21 Ae. tauschii accessions enriched for CAAs. Using the top six Kansas adapted wheat varieties as recurrent parents and the selected Ae. tauschii accessions as donor parents, inter-specific population carrying introgression of the Ae. tauschii alleles in the D genome. Three hundred and fifty-one inter-specific BC1F3:5 lines developed through direct hybridization are used in studying the genomic pattern of alien introgression. Using 136 georeferenced Ae. tauschii accessions collected throughout the wide range of climatic conditions, I find that the Ae. tauschii broad lineages segregate with the eco-geographic climatic gradients. Out of 103 historical bioclimatic variables, twelve unique non-collinear climatic variables were identified. Climate, geography, and climate together with geography, respectively, explain 28%, 55%, and 65% of the SNPs variation. A genome-wide environmental scan identified a total of 508 CAAs, out of which 322 were successfully transferred into the Ae. tauschii-wheat inter-specific population. A separate analysis using the same data finds that hybrid sterility, reduced introgression in the pericentromeric regions, and reduced retention of the introgressed alleles in regions carrying domestication gene contribute to low retention of alien introgression in the inter-specific population. The field-based evaluation of 351 introgression lines in drought vs rainfed trials showed that 25 % of these lines outperform the best checks, implying successful introgression of beneficial variants positively affecting wheat performance under stress conditions. However, more in-depth analysis is required to understand the effect of these alien introgressions on wheat performance. Overall, my research demonstrates the tremendous potential of wild relatives' genetic diversity for breeding climate-resilient wheat.
Download or read book Utilizing Wild Grass Biodiversity in Wheat Improvement written by A. Mujeeb-Kazi and published by CIMMYT. This book was released on 1995 with total page 165 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Biodiversity and Wheat Improvement written by A. B. Damania and published by John Wiley & Sons. This book was released on 1993 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: ICARDA International Center for Agricultural Research in the Dry Areas Address: P.O. Box 5466, Aleppo, Syria Telex: 331206 ICARDA SY, 331208 ICARDA SY Fax: 963-21-213490 Established in 1977, ICARDA is governed by an independent Board of Trustees. Based at Aleppo, Syria, it is one of 18 centres supported by the Consultative Group on International Agricultural Research (CGIAR), which is an international group of representatives of donor agencies, eminent agricultural scientists, and institutional administrators from developed and developing countries who guide and support its work. The CGIAR seeks to enhance and sustain food production and, at the same time, improve the socioeconomic conditions of people through strengthening national research systems in developing countries. ICARDA focuses its research efforts on areas with a dry summer, where precipitation in winter ranges from 200 mm to 600 mm. The Center has a global responsibility for the improvement of barley, lentil and faba bean, and a regional responsibility — in West Asia and North Africa — for the improvement of wheat, chickpea and pasture and forage crops and the associated farming systems. Much of ICARDA’s research is carried out on a 948-hectare farm at its headquarters at Tel Hadya, about 35 km south-west of Aleppo. ICARDA also manages other sites where it tests material under a variety of agroecological conditions in Syria and Lebanon. However, the full scope of ICARDA’s activities can be appreciated only when account is taken of the cooperative research carried out with many countries in West Asia and North Africa. The results of research are transferred through ICARDA’s cooperation with national and regional research institutions, universities and ministries of agriculture, and through the technical assistance and training that the Center provides. A range of training programmes is offered, extending from residential courses for groups to advanced research opportunities for individuals. These efforts are supported by seminars and publications and by specialised information services.
Download or read book Wild Crop Relatives Genomic and Breeding Resources written by Chittaranjan Kole and published by Springer Science & Business Media. This book was released on 2011-03-04 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: Wild crop plants play a significant part in the elucidation and improvement of the genomes of their cultivated counterparts. The 10-volume Wild Crop Relatives: Genomic and Breeding Resources offers a comprehensive examination of wild crops as a gold mine for breeding. It details the status, origin, distribution, morphology, cytology, genetic diversity and available genetic and genomic resources of numerous wild crop relatives, as well as of their evolution and phylogenetic relationship. Further topics include their role as model plants, genetic erosion and conservation efforts, and their domestication for the purposes of bioenergy, phytomedicines, nutraceuticals and phytoremediation. Wild Crop Relatives: Genomic and Breeding Resources comprises 10 volumes on cereals, millets and grasses, oilseeds, legume crops and forages, vegetables, temperate fruits, tropical and subtropical fruits, industrial crops, plantation and ornamental crops, and forest trees. It contains 126 chapters contributed by 380 authors from 39 countries.
Download or read book Advances in Wheat Genetics From Genome to Field written by Yasunari Ogihara and published by Springer. This book was released on 2015-09-15 with total page 421 pages. Available in PDF, EPUB and Kindle. Book excerpt: This proceedings is a collection of 46 selected papers that were presented at the 12th International Wheat Genetics Symposium (IWGS). Since the launch of the wheat genome sequencing project in 2005, the arrival of draft genome sequences has marked a new era in wheat genetics and genomics, catalyzing rapid advancement in the field. This book provides a comprehensive review of the forefront of wheat research, across various important topics such as germplasm and genetic diversity, cytogenetics and allopolyploid evolution, genome sequencing, structural and functional genomics, gene function and molecular biology, biotic stress, abiotic stress, grain quality, and classical and molecular breeding. Following an introduction, 9 parts of the book are dedicated to each of these topics. A final, 11th part entitled “Toward Sustainable Wheat Production” contains 7 excellent papers that were presented in the 12th IWGS Special Session supported by the OECD. With rapid population growth and radical climate changes, the world faces a global food crisis and is in need of another Green Revolution to boost yields of wheat and other widely grown staple crops. Although this book focuses on wheat, many of the newly developed techniques and results presented here can be applied to other plant species with large and complex genomes. As such, this volume is highly recommended for all students and researchers in wheat sciences and related plant sciences and for those who are interested in stable food production and food security.
Download or read book Plant Breeding Reviews Volume 37 written by Jules Janick and published by John Wiley & Sons. This book was released on 2013-01-29 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant Breeding Reviews presents state-of-the-art reviews on plant genetics and the breeding of all types of crops by both traditional means and molecular methods. Many of the crops widely grown today stem from a very narrow genetic base; understanding and preserving crop genetic resources is vital to the security of food systems worldwide. The emphasis of the series is on methodology, a fundamental understanding of crop genetics, and applications to major crops. It is a serial title that appears in the form of one or two volumes per year.
Download or read book Wheat Blast written by Sudheer Kumar and published by CRC Press. This book was released on 2020-04-09 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt: Wheat Blast provides systematic and practical information on wheat blast pathology, summarises research progress and discusses future perspectives based on current understanding of the existing issues. The book explores advance technologies that may help in deciding the path for future research and development for better strategies and techniques to manage the wheat blast disease. It equips readers with basic and applied understanding on the identification of disease, its distribution and chances of further spread in new areas, its potential to cause yield losses to wheat, the conditions that favour disease development, disease prediction modelling, resistance breeding methods and management strategies against wheat blast. Features: Provides comprehensive information on wheat blast pathogen and its management under a single umbrella Covers disease identification and diagnostics which will be helpful to check introduction in new areas Discusses methods and protocol to study the different aspects of the disease such as diagnostics, variability, resistance screening, epiphytotic creation etc. Gives deep insight on the past, present and future outlook of wheat blast research progress This book’s chapters are contributed by experts and pioneers in their respective fields and it provides comprehensive insight with updated findings on wheat blast research. It serves as a valuable reference for researchers, policy makers, students, teachers, farmers, seed growers, traders, and other stakeholders dealing with wheat.
Download or read book Gene flow from wheat Triticum aestivum L toAegilops L species written by Nicola Schoenenberger and published by Sudwestdeutscher Verlag Fur Hochschulschriften AG. This book was released on 2009 with total page 108 pages. Available in PDF, EPUB and Kindle. Book excerpt: Hybridisation and introgression from crops to wild relatives is a key issue in risk assessment. These dynamics between wheat and tetraploid Aegilops L. species were investigated by experiments in natural conditions or in the greenhouse, and by genetic analyses. DNA fragments from different wheat genome areas were tracked along introgression lines with Aegilops cylindrica Host, demonstrating that transgene flow might occur significantly in a scenario of wide cultivation of GM wheat. Insertion of transgenes in unshared genomes between the species would not necessarily prevent functional gene escape into wild grasses. In order to describe crop-weed dynamics in agroecosystems and to quantify inheritance of transgenes, we assessed fertility of the hybrid progeny, pollination distances, molecular and chromosome constitution, and transgene expression. The study then assesses population genetic structure of wild Ae. cylindrica over two continents, revealing a low genetic diversity within the species. The last chapter describes early generation introgression between wheat and Aegilops geniculata Roth, the most widespread and frequent Aegilops species in the Mediterranean area.
Download or read book Evolution of Wild Emmer and Wheat Improvement written by E. Nevo and published by Springer Science & Business Media. This book was released on 2002-01-29 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: Wild emmer is the progenitor of most cultivated wheats and thus an important source of wheat improvement. This book draws the results from multidisciplinary studies on the ecological, genetic, genomic, agronomic, and evolutionary aspects of wild emmer, conducted at many labs around the world. It is divided into the following parts: Origin and Evolution of Wheat - Population Genetics of Wild Emmer Wheat at the Protein and DNA Levels - Genetic Resources of Wild Emmer for Wheat Improvement - Genome Organization and Genetic Mapping - Conclusions and Prospects. The authors describe the evolution of wild emmer as a model organism of a selfer in evolutionary biology, and its rich potential genetic resources for wheat improvement.
Download or read book The World Wheat Book written by Alain P. Bonjean and published by Intercept Limited. This book was released on 2001-01 with total page 1131 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work is a comprehensive history of wheat across all its main areas of production. New techniques such as in vitro culture now enable the development of a greater level of understanding of the genetics of wheat.
Download or read book Alien Introgression in Wheat written by Márta Molnár-Láng and published by Springer. This book was released on 2015-11-20 with total page 387 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of the latest advancements in the field of alien introgression in wheat. The discovery and wide application of molecular genetic techniques including molecular markers, in situ hybridization, and genomics has led to a surge in interspecific and intergeneric hybridization in recent decades. The work begins with the taxonomy of cereals, especially of those species which are potential gene sources for wheat improvement. The text then goes on to cover the origin of wheat, breeding in connection with alien introgressions, and the problems of producing intergeneric hybrids and backcross derivatives. These problems can include crossability, sterility, and unequal chromosome transmission. The work then covers alien introgressions according to the related species used, as well as new results in the field of genomics of wild wheat relatives and introgressions.
Download or read book Exploiting the Genetic Diversity of Wild Ancestors and Relatives of Wheat for Its Improvement written by Jagdeep Singh Sidhu and published by . This book was released on 2018 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Barley Genome written by Nils Stein and published by Springer. This book was released on 2018-08-18 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley’s importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.
Download or read book The Rye Genome written by M. Timothy Rabanus-Wallace and published by Springer Nature. This book was released on 2021-10-25 with total page 251 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book celebrates the dawn of the rye genomics era with concise, comprehensive, and accessible reviews on the current state of rye genomic research, written by experts in the field for students, researchers and growers. To most, rye is the key ingredient in a flavoursome bread or their favourite American whisky. To a farmer, rye is the remarkable grain that tolerates the harshest winters and the most unforgiving soils, befitting its legacy as the life-giving seed that fed the ancient civilisations of northern Eurasia. Since the mid-1900s, scientists have employed genetic approaches to better understand and utilize rye, but only since the technological advances of the mid-2010s has the possibility of addressing questions using rye genome assemblies become a reality. Alongside the secret of its unique survival abilities, rye genomics has accelerated research on a host of intriguing topics such as the complex history of rye’s domestication by humans, the nature of genes that switch fertility on and off, the function and origin of accessory chromosomes, and the evolution of selfish DNA.
Download or read book Data Production and Analysis in Population Genomics written by Francois Pompanon and published by Humana Press. This book was released on 2012-05-28 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Population genomics is a recently emerged discipline, which aims at understanding how evolutionary processes influence genetic variation across genomes. Today, in the era of cheaper next-generation sequencing, it is no longer as daunting to obtain whole genome data for any species of interest and population genomics is now conceivable in a wide range of fields, from medicine and pharmacology to ecology and evolutionary biology. However, because of the lack of reference genome and of enough a priori data on the polymorphism, population genomics analyses of populations will still involve higher constraints for researchers working on non-model organisms, as regards the choice of the genotyping/sequencing technique or that of the analysis methods. Therefore, Data Production and Analysis in Population Genomics purposely puts emphasis on protocols and methods that are applicable to species where genomic resources are still scarce. It is divided into three convenient sections, each one tackling one of the main challenges facing scientists setting up a population genomics study. The first section helps devising a sampling and/or experimental design suitable to address the biological question of interest. The second section addresses how to implement the best genotyping or sequencing method to obtain the required data given the time and cost constraints as well as the other genetic resources already available, Finally, the last section is about making the most of the (generally huge) dataset produced by using appropriate analysis methods in order to reach a biologically relevant conclusion. Written in the successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, advice on methodology and implementation, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Data Production and Analysis in Population Genomics serves a wide readership by providing guidelines to help choose and implement the best experimental or analytical strategy for a given purpose.
