Download or read book Generalized Linear Mixed Models with Applications in Agriculture and Biology written by Josafhat Salinas Ruíz and published by Springer Nature. This book was released on 2023-08-16 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book offers an introduction to mixed generalized linear models with applications to the biological sciences, basically approached from an applications perspective, without neglecting the rigor of the theory. For this reason, the theory that supports each of the studied methods is addressed and later - through examples - its application is illustrated. In addition, some of the assumptions and shortcomings of linear statistical models in general are also discussed. An alternative to analyse non-normal distributed response variables is the use of generalized linear models (GLM) to describe the response data with an exponential family distribution that perfectly fits the real response. Extending this idea to models with random effects allows the use of Generalized Linear Mixed Models (GLMMs). The use of these complex models was not computationally feasible until the recent past, when computational advances and improvements to statistical analysis programs allowed users to easily, quickly, and accurately apply GLMM to data sets. GLMMs have attracted considerable attention in recent years. The word "Generalized" refers to non-normal distributions for the response variable and the word "Mixed" refers to random effects, in addition to the fixed effects typical of analysis of variance (or regression). With the development of modern statistical packages such as Statistical Analysis System (SAS), R, ASReml, among others, a wide variety of statistical analyzes are available to a wider audience. However, to be able to handle and master more sophisticated models requires proper training and great responsibility on the part of the practitioner to understand how these advanced tools work. GMLM is an analysis methodology used in agriculture and biology that can accommodate complex correlation structures and types of response variables.

Download or read book Analysis of Generalized Linear Mixed Models in the Agricultural and Natural Resources Sciences written by Edward E. Gbur and published by John Wiley & Sons. This book was released on 2020-01-22 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: Generalized Linear Mixed Models in the Agricultural and Natural Resources Sciences provides readers with an understanding and appreciation for the design and analysis of mixed models for non-normally distributed data. It is the only publication of its kind directed specifically toward the agricultural and natural resources sciences audience. Readers will especially benefit from the numerous worked examples based on actual experimental data and the discussion of pitfalls associated with incorrect analyses.

Download or read book Analysis of Generalized Linear Mixed Models in the Agricultural and Natural Resources Sciences written by Edward E. Gbur and published by . This book was released on 2012 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: Generalized Linear Mixed Models in the Agricultural and Natural Resources Sciences provides readers with an understanding and appreciation for the design and analysis of mixed models for non-normally distributed data. It is the only publication of its kind directed specifically toward the agricultural and natural resources sciences audience. Readers will especially benefit from the numerous worked examples based on actual experimental data and the discussion of pitfalls associated with incorrect analyses.

Download or read book Generalized Linear Mixed Models written by Walter W. Stroup and published by CRC Press. This book was released on 2016-04-19 with total page 547 pages. Available in PDF, EPUB and Kindle. Book excerpt: With numerous examples using SAS PROC GLIMMIX, this text presents an introduction to linear modeling using the generalized linear mixed model as an overarching conceptual framework. For readers new to linear models, the book helps them see the big picture. It shows how linear models fit with the rest of the core statistics curriculum and points out the major issues that statistical modelers must consider.

Download or read book Generalized Linear Mixed Models written by Walter W. Stroup and published by CRC Press. This book was released on 2024-05-21 with total page 671 pages. Available in PDF, EPUB and Kindle. Book excerpt: Generalized Linear Mixed Models: Modern Concepts, Methods, and Applications (2nd edition) presents an updated introduction to linear modeling using the generalized linear mixed model (GLMM) as the overarching conceptual framework. For students new to statistical modeling, this book helps them see the big picture – linear modeling as broadly understood and its intimate connection with statistical design and mathematical statistics. For readers experienced in statistical practice, but new to GLMMs, the book provides a comprehensive introduction to GLMM methodology and its underlying theory. Unlike textbooks that focus on classical linear models or generalized linear models or mixed models, this book covers all of the above as members of a unified GLMM family of linear models. In addition to essential theory and methodology, this book features a rich collection of examples using SAS® software to illustrate GLMM practice. This second edition is updated to reflect lessons learned and experience gained regarding best practices and modeling choices faced by GLMM practitioners. New to this edition are two chapters focusing on Bayesian methods for GLMMs. Key Features: • Most statistical modeling books cover classical linear models or advanced generalized and mixed models; this book covers all members of the GLMM family – classical and advanced models. • Incorporates lessons learned from experience and on-going research to provide up-to-date examples of best practices. • Illustrates connections between statistical design and modeling: guidelines for translating study design into appropriate model and in-depth illustrations of how to implement these guidelines; use of GLMM methods to improve planning and design. • Discusses the difference between marginal and conditional models, differences in the inference space they are intended to address and when each type of model is appropriate. • In addition to likelihood-based frequentist estimation and inference, provides a brief introduction to Bayesian methods for GLMMs. Walt Stroup is an Emeritus Professor of Statistics. He served on the University of Nebraska statistics faculty for over 40 years, specializing in statistical modeling and statistical design. He is a Fellow of the American Statistical Association, winner of the University of Nebraska Outstanding Teaching and Innovative Curriculum Award and author or co-author of three books on mixed models and their extensions. Marina Ptukhina (Pa-too-he-nuh), PhD, is an Associate Professor of Statistics at Whitman College. She is interested in statistical modeling, design and analysis of research studies and their applications. Her research includes applications of statistics to economics, biostatistics and statistical education. Ptukhina earned a PhD in Statistics from the University of Nebraska-Lincoln, a Master of Science degree in Mathematics from Texas Tech University and a Specialist degree in Management from The National Technical University "Kharkiv Polytechnic Institute." Julie Garai, PhD, is a Data Scientist at Loop. She earned her PhD in Statistics from the University of Nebraska-Lincoln and a bachelor’s degree in Mathematics and Spanish from Doane College. Dr Garai actively collaborates with statisticians, psychologists, ecologists, forest scientists, software engineers, and business leaders in academia and industry. In her spare time, she enjoys leisurely walks with her dogs, dance parties with her children, and playing the trombone.

Download or read book Extending the Linear Model with R written by Julian J. Faraway and published by CRC Press. This book was released on 2016-03-23 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: Start Analyzing a Wide Range of Problems Since the publication of the bestselling, highly recommended first edition, R has considerably expanded both in popularity and in the number of packages available. Extending the Linear Model with R: Generalized Linear, Mixed Effects and Nonparametric Regression Models, Second Edition takes advantage of the greater functionality now available in R and substantially revises and adds several topics. New to the Second Edition Expanded coverage of binary and binomial responses, including proportion responses, quasibinomial and beta regression, and applied considerations regarding these models New sections on Poisson models with dispersion, zero inflated count models, linear discriminant analysis, and sandwich and robust estimation for generalized linear models (GLMs) Revised chapters on random effects and repeated measures that reflect changes in the lme4 package and show how to perform hypothesis testing for the models using other methods New chapter on the Bayesian analysis of mixed effect models that illustrates the use of STAN and presents the approximation method of INLA Revised chapter on generalized linear mixed models to reflect the much richer choice of fitting software now available Updated coverage of splines and confidence bands in the chapter on nonparametric regression New material on random forests for regression and classification Revamped R code throughout, particularly the many plots using the ggplot2 package Revised and expanded exercises with solutions now included Demonstrates the Interplay of Theory and Practice This textbook continues to cover a range of techniques that grow from the linear regression model. It presents three extensions to the linear framework: GLMs, mixed effect models, and nonparametric regression models. The book explains data analysis using real examples and includes all the R commands necessary to reproduce the analyses.

Download or read book Modern Analysis of Biological Data written by Stanislav Pekár and published by Masarykova univerzita. This book was released on 2016-01-01 with total page 259 pages. Available in PDF, EPUB and Kindle. Book excerpt: Kniha je zaměřena na regresní modely, konkrétně jednorozměrné zobecněné lineární modely (GLM). Je určena především studentům a kolegům z biologických oborů a vyžaduje pouze základní statistické vzdělání, jakým je např. jednosemestrový kurz biostatistiky. Text knihy obsahuje nezbytné minimum statistické teorie, především však řešení 18 reálných příkladů z oblasti biologie. Každý příklad je rozpracován od popisu a stanovení cíle přes vývoj statistického modelu až po závěr. K analýze dat je použit populární a volně dostupný statistický software R. Příklady byly záměrně vybrány tak, aby upozornily na leckteré problémy a chyby, které se mohou v průběhu analýzy dat vyskytnout. Zároveň mají čtenáře motivovat k tomu, jak o statistických modelech přemýšlet a jak je používat. Řešení příkladů si může čtenář vyzkoušet sám na datech, jež jsou dodávána spolu s knihou.

Download or read book Generalized Additive Models written by Simon N. Wood and published by CRC Press. This book was released on 2017-05-18 with total page 476 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first edition of this book has established itself as one of the leading references on generalized additive models (GAMs), and the only book on the topic to be introductory in nature with a wealth of practical examples and software implementation. It is self-contained, providing the necessary background in linear models, linear mixed models, and generalized linear models (GLMs), before presenting a balanced treatment of the theory and applications of GAMs and related models. The author bases his approach on a framework of penalized regression splines, and while firmly focused on the practical aspects of GAMs, discussions include fairly full explanations of the theory underlying the methods. Use of R software helps explain the theory and illustrates the practical application of the methodology. Each chapter contains an extensive set of exercises, with solutions in an appendix or in the book’s R data package gamair, to enable use as a course text or for self-study. Simon N. Wood is a professor of Statistical Science at the University of Bristol, UK, and author of the R package mgcv.

Download or read book Mixed Effects Models in S and S PLUS written by José C. Pinheiro and published by Springer Science & Business Media. This book was released on 2009-04-15 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt: R, linear models, random, fixed, data, analysis, fit.

Download or read book Working with Dynamic Crop Models written by Daniel Wallach and published by Academic Press. This book was released on 2018-09-25 with total page 613 pages. Available in PDF, EPUB and Kindle. Book excerpt: Working with Dynamic Crop Models: Methods, Tools and Examples for Agriculture and Environment, 3e, is a complete guide to working with dynamic system models, with emphasis on models in agronomy and environmental science. The introductory section presents the foundational information for the book including the basics of system models, simulation, the R programming language, and the statistical notions necessary for working with system models. The most important methods of working with dynamic system models, namely uncertainty and sensitivity analysis, model calibration (frequentist and Bayesian), model evaluation, and data assimilation are all treated in detail, in individual chapters. New chapters cover the use of multi-model ensembles, the creation of metamodels that emulate the more complex dynamic system models, the combination of genetic and environmental information in gene-based crop models, and the use of dynamic system models to aid in sampling. The book emphasizes both understanding and practical implementation of the methods that are covered. Each chapter simply and clearly explains the underlying principles and assumptions of each method that is presented, with numerous examples and illustrations. R code for applying the methods is given throughout. This code is designed so that it can be adapted relatively easily to new problems. An expanded introductory section presents the basics of dynamic system modeling, with numerous examples from multiple fields, plus chapters on numerical simulation, statistics for modelers, and the R language. Covers in detail the basic methods: uncertainty and sensitivity analysis, model calibration (both frequentist and Bayesian), model evaluation, and data assimilation. Every method chapter has numerous examples of applications based on real problems, as well as detailed instructions for applying the methods to new problems using R. Each chapter has multiple exercises for self-testing or for classroom use. An R package with much of the code from the book can be freely downloaded from the CRAN package repository.

Download or read book Generalized Linear Models written by Raymond H. Myers and published by John Wiley & Sons. This book was released on 2012-01-20 with total page 521 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for the First Edition "The obvious enthusiasm of Myers, Montgomery, and Vining and their reliance on their many examples as a major focus of their pedagogy make Generalized Linear Models a joy to read. Every statistician working in any area of applied science should buy it and experience the excitement of these new approaches to familiar activities." —Technometrics Generalized Linear Models: With Applications in Engineering and the Sciences, Second Edition continues to provide a clear introduction to the theoretical foundations and key applications of generalized linear models (GLMs). Maintaining the same nontechnical approach as its predecessor, this update has been thoroughly extended to include the latest developments, relevant computational approaches, and modern examples from the fields of engineering and physical sciences. This new edition maintains its accessible approach to the topic by reviewing the various types of problems that support the use of GLMs and providing an overview of the basic, related concepts such as multiple linear regression, nonlinear regression, least squares, and the maximum likelihood estimation procedure. Incorporating the latest developments, new features of this Second Edition include: A new chapter on random effects and designs for GLMs A thoroughly revised chapter on logistic and Poisson regression, now with additional results on goodness of fit testing, nominal and ordinal responses, and overdispersion A new emphasis on GLM design, with added sections on designs for regression models and optimal designs for nonlinear regression models Expanded discussion of weighted least squares, including examples that illustrate how to estimate the weights Illustrations of R code to perform GLM analysis The authors demonstrate the diverse applications of GLMs through numerous examples, from classical applications in the fields of biology and biopharmaceuticals to more modern examples related to engineering and quality assurance. The Second Edition has been designed to demonstrate the growing computational nature of GLMs, as SAS®, Minitab®, JMP®, and R software packages are used throughout the book to demonstrate fitting and analysis of generalized linear models, perform inference, and conduct diagnostic checking. Numerous figures and screen shots illustrating computer output are provided, and a related FTP site houses supplementary material, including computer commands and additional data sets. Generalized Linear Models, Second Edition is an excellent book for courses on regression analysis and regression modeling at the upper-undergraduate and graduate level. It also serves as a valuable reference for engineers, scientists, and statisticians who must understand and apply GLMs in their work.

Download or read book Introduction to Statistical Methods for Financial Models written by Thomas A Severini and published by CRC Press. This book was released on 2017-07-06 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an introduction to the use of statistical concepts and methods to model and analyze financial data. The ten chapters of the book fall naturally into three sections. Chapters 1 to 3 cover some basic concepts of finance, focusing on the properties of returns on an asset. Chapters 4 through 6 cover aspects of portfolio theory and the methods of estimation needed to implement that theory. The remainder of the book, Chapters 7 through 10, discusses several models for financial data, along with the implications of those models for portfolio theory and for understanding the properties of return data. The audience for the book is students majoring in Statistics and Economics as well as in quantitative fields such as Mathematics and Engineering. Readers are assumed to have some background in statistical methods along with courses in multivariate calculus and linear algebra.

Download or read book Statistical Regression and Classification written by Norman Matloff and published by CRC Press. This book was released on 2017-09-19 with total page 490 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Regression and Classification: From Linear Models to Machine Learning takes an innovative look at the traditional statistical regression course, presenting a contemporary treatment in line with today's applications and users. The text takes a modern look at regression: * A thorough treatment of classical linear and generalized linear models, supplemented with introductory material on machine learning methods. * Since classification is the focus of many contemporary applications, the book covers this topic in detail, especially the multiclass case. * In view of the voluminous nature of many modern datasets, there is a chapter on Big Data. * Has special Mathematical and Computational Complements sections at ends of chapters, and exercises are partitioned into Data, Math and Complements problems. * Instructors can tailor coverage for specific audiences such as majors in Statistics, Computer Science, or Economics. * More than 75 examples using real data. The book treats classical regression methods in an innovative, contemporary manner. Though some statistical learning methods are introduced, the primary methodology used is linear and generalized linear parametric models, covering both the Description and Prediction goals of regression methods. The author is just as interested in Description applications of regression, such as measuring the gender wage gap in Silicon Valley, as in forecasting tomorrow's demand for bike rentals. An entire chapter is devoted to measuring such effects, including discussion of Simpson's Paradox, multiple inference, and causation issues. Similarly, there is an entire chapter of parametric model fit, making use of both residual analysis and assessment via nonparametric analysis. Norman Matloff is a professor of computer science at the University of California, Davis, and was a founder of the Statistics Department at that institution. His current research focus is on recommender systems, and applications of regression methods to small area estimation and bias reduction in observational studies. He is on the editorial boards of the Journal of Statistical Computation and the R Journal. An award-winning teacher, he is the author of The Art of R Programming and Parallel Computation in Data Science: With Examples in R, C++ and CUDA.

Download or read book Stochastic Processes written by Peter Watts Jones and published by CRC Press. This book was released on 2017-10-30 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Based on a well-established and popular course taught by the authors over many years, Stochastic Processes: An Introduction, Third Edition, discusses the modelling and analysis of random experiments, where processes evolve over time. The text begins with a review of relevant fundamental probability. It then covers gambling problems, random walks, and Markov chains. The authors go on to discuss random processes continuous in time, including Poisson, birth and death processes, and general population models, and present an extended discussion on the analysis of associated stationary processes in queues. The book also explores reliability and other random processes, such as branching, martingales, and simple epidemics. A new chapter describing Brownian motion, where the outcomes are continuously observed over continuous time, is included. Further applications, worked examples and problems, and biographical details have been added to this edition. Much of the text has been reworked. The appendix contains key results in probability for reference. This concise, updated book makes the material accessible, highlighting simple applications and examples. A solutions manual with fully worked answers of all end-of-chapter problems, and Mathematica® and R programs illustrating many processes discussed in the book, can be downloaded from crcpress.com.

Download or read book General Technical Report RMRS written by and published by . This book was released on 1998 with total page 56 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Research Agenda for Integrated Landscape Modeling written by Sam Cushman and published by . This book was released on 2007 with total page 56 pages. Available in PDF, EPUB and Kindle. Book excerpt: Reliable predictions of how changing climate and disturbance regimes will affect forest ecosystems are crucial for effective forest management. Current fire and climate research in forest ecosystem and community ecology offers data and methods that can inform such predictions. However, research in these fields occurs at different scales, with disparate goals, methods, and context. Often results are not readily comparable among studies and defy integration. We discuss the strengths and weaknesses of three modeling paradigms: empirical gradient models, mechanistic ecosystem models, and stochastic landscape disturbance models. We then propose a synthetic approach to multi-scale analysis of the effects of climatic change and disturbance on forest ecosystems. Empirical gradient models provide an anchor and spatial template for stand-level forest ecosystem models by quantifying key parameters for individual species and accounting for broad-scale geographic variation among them. Gradient imputation transfers predictions of fine-scale forest composition and structure across geographic space. Mechanistic ecosystem dynamic models predict the responses of biological variables to specific environmental drivers and facilitate understanding of temporal dynamics and disequilibrium. Stochastic landscape dynamics models predict frequency, extent, and severity of broad-scale disturbance. A robust linkage of these three modeling paradigms will facilitate prediction of the effects of altered fire and other disturbance regimes on forest ecosystems at multiple scales and in the context of climatic variability and change.

Download or read book Introduction to Functional Data Analysis written by Piotr Kokoszka and published by CRC Press. This book was released on 2017-09-27 with total page 307 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction to Functional Data Analysis provides a concise textbook introduction to the field. It explains how to analyze functional data, both at exploratory and inferential levels. It also provides a systematic and accessible exposition of the methodology and the required mathematical framework. The book can be used as textbook for a semester-long course on FDA for advanced undergraduate or MS statistics majors, as well as for MS and PhD students in other disciplines, including applied mathematics, environmental science, public health, medical research, geophysical sciences and economics. It can also be used for self-study and as a reference for researchers in those fields who wish to acquire solid understanding of FDA methodology and practical guidance for its implementation. Each chapter contains plentiful examples of relevant R code and theoretical and data analytic problems. The material of the book can be roughly divided into four parts of approximately equal length: 1) basic concepts and techniques of FDA, 2) functional regression models, 3) sparse and dependent functional data, and 4) introduction to the Hilbert space framework of FDA. The book assumes advanced undergraduate background in calculus, linear algebra, distributional probability theory, foundations of statistical inference, and some familiarity with R programming. Other required statistics background is provided in scalar settings before the related functional concepts are developed. Most chapters end with references to more advanced research for those who wish to gain a more in-depth understanding of a specific topic.