Download or read book Feature Representation and Learning Methods With Applications in Protein Secondary Structure written by Zhibin Lv and published by Frontiers Media SA. This book was released on 2021-10-25 with total page 112 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Methods and Applications in Molecular Phylogenetics written by Juan Wang and published by Frontiers Media SA. This book was released on 2022-08-03 with total page 107 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Change of Representation in Machine Learning and an Application to Protein Structure Prediction written by Thomas Richard Ioerger and published by . This book was released on 1996 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Computational genomics and structural bioinformatics in personalized medicines volume II written by George Priya Doss C and published by Frontiers Media SA. This book was released on 2023-11-06 with total page 196 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Biotechnological applications of endophytes in agriculture environment and industry written by Vijay K. Sharma and published by Frontiers Media SA. This book was released on 2023-09-08 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Graph Representation Learning written by William L. William L. Hamilton and published by Springer Nature. This book was released on 2022-06-01 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt: Graph-structured data is ubiquitous throughout the natural and social sciences, from telecommunication networks to quantum chemistry. Building relational inductive biases into deep learning architectures is crucial for creating systems that can learn, reason, and generalize from this kind of data. Recent years have seen a surge in research on graph representation learning, including techniques for deep graph embeddings, generalizations of convolutional neural networks to graph-structured data, and neural message-passing approaches inspired by belief propagation. These advances in graph representation learning have led to new state-of-the-art results in numerous domains, including chemical synthesis, 3D vision, recommender systems, question answering, and social network analysis. This book provides a synthesis and overview of graph representation learning. It begins with a discussion of the goals of graph representation learning as well as key methodological foundations in graph theory and network analysis. Following this, the book introduces and reviews methods for learning node embeddings, including random-walk-based methods and applications to knowledge graphs. It then provides a technical synthesis and introduction to the highly successful graph neural network (GNN) formalism, which has become a dominant and fast-growing paradigm for deep learning with graph data. The book concludes with a synthesis of recent advancements in deep generative models for graphs—a nascent but quickly growing subset of graph representation learning.
Download or read book Machine Learning Meets Quantum Physics written by Kristof T. Schütt and published by Springer Nature. This book was released on 2020-06-03 with total page 473 pages. Available in PDF, EPUB and Kindle. Book excerpt: Designing molecules and materials with desired properties is an important prerequisite for advancing technology in our modern societies. This requires both the ability to calculate accurate microscopic properties, such as energies, forces and electrostatic multipoles of specific configurations, as well as efficient sampling of potential energy surfaces to obtain corresponding macroscopic properties. Tools that can provide this are accurate first-principles calculations rooted in quantum mechanics, and statistical mechanics, respectively. Unfortunately, they come at a high computational cost that prohibits calculations for large systems and long time-scales, thus presenting a severe bottleneck both for searching the vast chemical compound space and the stupendously many dynamical configurations that a molecule can assume. To overcome this challenge, recently there have been increased efforts to accelerate quantum simulations with machine learning (ML). This emerging interdisciplinary community encompasses chemists, material scientists, physicists, mathematicians and computer scientists, joining forces to contribute to the exciting hot topic of progressing machine learning and AI for molecules and materials. The book that has emerged from a series of workshops provides a snapshot of this rapidly developing field. It contains tutorial material explaining the relevant foundations needed in chemistry, physics as well as machine learning to give an easy starting point for interested readers. In addition, a number of research papers defining the current state-of-the-art are included. The book has five parts (Fundamentals, Incorporating Prior Knowledge, Deep Learning of Atomistic Representations, Atomistic Simulations and Discovery and Design), each prefaced by editorial commentary that puts the respective parts into a broader scientific context.
Download or read book Machine Learning and Data Mining in Pattern Recognition written by Petra Perner and published by Springer. This book was released on 2005-08-25 with total page 709 pages. Available in PDF, EPUB and Kindle. Book excerpt: We met again in front of the statue of Gottfried Wilhelm von Leibniz in the city of Leipzig. Leibniz, a famous son of Leipzig, planned automatic logical inference using symbolic computation, aimed to collate all human knowledge. Today, artificial intelligence deals with large amounts of data and knowledge and finds new information using machine learning and data mining. Machine learning and data mining are irreplaceable subjects and tools for the theory of pattern recognition and in applications of pattern recognition such as bioinformatics and data retrieval. This was the fourth edition of MLDM in Pattern Recognition which is the main event of Technical Committee 17 of the International Association for Pattern Recognition; it started out as a workshop and continued as a conference in 2003. Today, there are many international meetings which are titled “machine learning” and “data mining”, whose topics are text mining, knowledge discovery, and applications. This meeting from the first focused on aspects of machine learning and data mining in pattern recognition problems. We planned to reorganize classical and well-established pattern recognition paradigms from the viewpoints of machine learning and data mining. Though it was a challenging program in the late 1990s, the idea has inspired new starting points in pattern recognition and effects in other areas such as cognitive computer vision.
Download or read book Interdisciplinary Research and Applications in Bioinformatics Computational Biology and Environmental Sciences written by Liu, Limin Angela and published by IGI Global. This book was released on 2010-10-31 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This book presents cutting-edge research in the field of computational and systems biology, presenting studies ranging from the atomic/molecular level to the genomic level and covering a wide spectrum of important biological problems and applications"--Provided by publisher.
Download or read book Fuzzy Systems Concepts Methodologies Tools and Applications written by Management Association, Information Resources and published by IGI Global. This book was released on 2017-02-22 with total page 1795 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are a myriad of mathematical problems that cannot be solved using traditional methods. The development of fuzzy expert systems has provided new opportunities for problem-solving amidst uncertainties. Fuzzy Systems: Concepts, Methodologies, Tools, and Applications is a comprehensive reference source on the latest scholarly research and developments in fuzzy rule-based methods and examines both theoretical foundations and real-world utilization of these logic sets. Featuring a range of extensive coverage across innovative topics, such as fuzzy logic, rule-based systems, and fuzzy analysis, this is an essential publication for scientists, doctors, engineers, physicians, and researchers interested in emerging perspectives and uses of fuzzy systems in various sectors.
Download or read book Bioinformatics Research and Applications written by Ion Măndoiu and published by Springer Science & Business Media. This book was released on 2007-04-26 with total page 1331 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Symposium on Bioinformatics Research and Applications, ISBRA 2007, held in Atlanta, GA, USA in May 2007. The 55 revised full papers presented together with three invited talks cover a wide range of topics, including clustering and classification, gene expression analysis, gene networks, genome analysis, motif finding, pathways, protein structure prediction, protein domain interactions, phylogenetics, and software tools.
Download or read book Machine Learning Methods for Evaluating the Quality of a Single Protein Model Using Energy and Structural Properties written by Junlin Wang (Researcher on computer science) and published by . This book was released on 2015 with total page 66 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational protein structure prediction is one of the most important problems in bioinformatics. In the process of protein three-dimensional structure prediction, assessing the quality of generated models accurately is crucial. Although many model quality assessment (QA) methods have been developed in the past years, the accuracy of the state-of-the-art single-model QA methods is still not high enough for practical applications. Although consensus QA methods performed significantly better than single-model QA methods in the CASP (Critical Assessment of protein Structure Prediction) competitions, they require a pool of models with diverse quality to perform well. In this thesis, new machine learning based methods are developed for single-model QA and top-model selection from a pool of candidates. These methods are based on a comprehensive set of model structure features, such as matching of secondary structure and solvent accessibility, as well as existing potential or energy function scores. For each model, using these features as inputs, machine learning methods are able to predict a quality score in the range of. Five state-of-the-art machine learning algorithms are implemented, trained, and tested using CASP datasets on various QA and selection tasks. Among the five algorithms, boosting and random forest achieved the best results overall. They outperform existing single-model QA methods, including DFIRE, RW and Proq2, significantly, by up to 10% in QA scores.
Download or read book Theory and Applications of Models of Computation written by Jin-Yi Cai and published by Springer. This book was released on 2006-05-05 with total page 809 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Theory and Applications of Models of Computation, TAMC 2006, held in Beijing, China, in May 2006. The 75 revised full papers presented together with 7 plenary talks were carefully reviewed and selected from 319 submissions. All major areas in computer science, mathematics (especially logic) and the physical sciences particularly with regard to computation and computability theory are addressed.
Download or read book Intelligent Computing Theories and Application written by De-Shuang Huang and published by Springer. This book was released on 2019-09-22 with total page 790 pages. Available in PDF, EPUB and Kindle. Book excerpt: This two-volume set of LNCS 11643 and LNCS 11644 constitutes - in conjunction with the volume LNAI 11645 - the refereed proceedings of the 15th International Conference on Intelligent Computing, ICIC 2019, held in Nanchang, China, in August 2019. The 217 full papers of the three proceedings volumes were carefully reviewed and selected from 609 submissions. The ICIC theme unifies the picture of contemporary intelligent computing techniques as an integral concept that highlights the trends in advanced computational intelligence and bridges theoretical research with applications. The theme for this conference is “Advanced Intelligent Computing Methodologies and Applications.” Papers related to this theme are especially solicited, including theories, methodologies, and applications in science and technology.
Download or read book Bioinformatics written by Information Resources Management Association and published by IGI Global. This book was released on 2013-03-31 with total page 1826 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Bioinformatics: Concepts, Methodologies, Tools, and Applications highlights the area of bioinformatics and its impact over the medical community with its innovations that change how we recognize and care for illnesses"--Provided by publisher.
Download or read book Bioinformatics Research and Applications written by Xuan Guo and published by Springer Nature. This book was released on 2023-11-08 with total page 567 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 19th International Symposium on Bioinformatics Research and Applications, ISBRA 2023, held in Wrocław, Poland, during October 9–12, 2023. The 28 full papers and 16 short papers included in this book were carefully reviewed and selected from 89 submissions. They were organized in topical sections as follows: reconciling inconsistent molecular structures from biochemical databases; radiology report generation via visual recalibration and context gating-aware; sequence-based nanobody-antigen binding prediction; and hist2Vec: kernel-based embeddings for biological sequence classification.
Download or read book Protein Structure Prediction written by Anna Tramontano and published by John Wiley & Sons. This book was released on 2006-02-20 with total page 226 pages. Available in PDF, EPUB and Kindle. Book excerpt: While most textbooks on bioinformatics focus on genetic algorithms and treat protein structure prediction only superficially, this course book assumes a novel and unique focus. Adopting a didactic approach, the author explains all the current methods in terms of their reliability, limitations and user-friendliness. She provides practical examples to help first-time users become familiar with the possibilities and pitfalls of computer-based structure prediction, making this a must-have for students and researchers.
