Download or read book Enhanced Hydrogen Production in Escherichia Coli Through Chemical Mutagenesis Gene Deletion and Transposon Mutagenesis written by Andrea Juliana Garzon Sanabria and published by . This book was released on 2011 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: We demonstrate that hydrogen production can be increased by random mutagenesis using N-methyl-N'-nitro-N-nitrosoguanidine (MNNG) and that hydrogen production can be further increased in the chemically-mutagenized strain by targeted gene deletion and overexpression of genes related to formate metabolism. Chemical mutagenesis of Escherichia coli BW25113 hyaB hybC hycE::kan/pBS(Kan)-HycE to form strain 3/86 resulted in 109 +/- 0.5- fold more hydrogen; 3/86 lacks functional hydrogen uptake hydrogenases 1 and 2, has hydrogenproducing hydrogenase 3 inactivated from the chromosome, and has constitutively active hydrogenase 3 based on expression of the large subunit of hydrogenase 3 from a high copy number plasmid. Deleting fdoG, which encodes formate dehydrogenase O, (that diverts formate from hydrogen), from chemical mutagen 3/86 increased hydrogen production 188 +/- 0.50-fold (relative to the unmutagenized strain), and deletion of hycA, which encodes the repressor of formate hydrogen lyase (FHL), increased hydrogen production 232 +/- 0.50-fold. Deleting both fdoG and hycA increased hydrogen production 257 +/- 0.50-fold, and overexpressing fhlA along with the fdoG hycA mutations increased hydrogen 308 +/- 0.52-fold. Whole-transcriptome analysis of chemical mutagen 3/86 revealed 89 genes were induced and 31 genes were repressed. In an effort to identify chromosomal mutations in chemical mutagen 3/86, we performed comparative genome sequencing and identified two chromosomal loci with mutations in coding regions of ftnA and yebJ; however, neither gene was related to the increased hydrogen production as determined by the close vial (short) hydrogen assay. In addition, transposon mutagenesis, which is one of the most efficient strategies for creating random mutations in the genomic DNA, was performed in two different strains: E. coli BW25113 hyaB hybC hycA fdoG::kan/pCA24N-FhlA and E. coli MG1655 to identify beneficial mutations for hydrogen production. As a result of screening 461 E. coli BW25113 hyaB hybC hycA fdoG::kan/pCA24N-FhlA transformants and 1000 E. coli MG1655 transformants, three interesting mutations have been discovered in E. coli BW25113 hyaB hybC hycA fdoG::kan/pCA24N-FhlA transformants (gpsA, dipZ, glgP) and 1 beneficial mutation in E. coli MG1655 transformants (malT). When any of these genes gpsA, dipZ, or glgP is disrupted by Tn5 insertion, hydrogen production decreases 17, 3 and 8-fold, respectively. Additionally, when malT gene is disrupted by Tn5 insertion, hydrogen increases 3.4-fold.
Download or read book Escherichia Coli Enhanced Hydrogen Production Genome wide Screening for Extracellular DNA and Influence of GGDEF Proteins on Early Biofilm Formation written by Viviana Sanchez Torres and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Escherichia coli is the best characterized bacterium; it grows rapidly, and it is easy to manipulate genetically. An increased knowledge about the physiology of this model organism will facilitate the development of engineered E.coli strains for applications such as production of biofuels and biofilm control. The aims of this work were the application of protein engineering to increase E. coli hydrogen production, the identification of the proteins regulating extracellular DNA production (eDNA), and the evaluation of the effect of the proteins synthesizing the signal 3'-5'-cyclic diguanylic acid (c-di-GMP) on biofilm formation. The Escherichia coli hydrogen production rate was increased 9 fold through random mutagenesis of fhlA. Variant FhlA133 (Q11H, L14V, Y177F, K245R, M288K, and I342F) enhances hydrogen production by increasing transcription of the four transcriptional units regulated by FhlA. The amino acid replacements E363G and L14G in FhlA increased hydrogen production 6 fold and 4 fold, respectively. The complete E. coli genome was screened to identify proteins that affect eDNA production. The nlpI, yfeC, and rna mutants increased eDNA production and the hns and rfaD mutants decreased eDNA production. Deletion of nlpI increases eDNA 3 fold while overexpression of nlpI decreases eDNA 16 fold. Global regulator H-NS is required for eDNA with E. coli since deletion of hns abolished eDNA production while overexpression of hns restored eDNA to 70 percent of the wild-type levels. Our results suggest that eDNA production in E. coli is related to direct secretion. Deletions of the genes encoding the diguanylate cyclases YeaI, YedQ, and YfiN increased swimming motility and eDNA as expected for low c-di-GMP levels. However, contrary to the current paradigm, early biofilm formation increased dramatically for the yeaI (30 fold), yedQ (12 fold), and yfiN (18 fold) mutants. Hence, our results suggest that c-di-GMP levels should be reduced for initial biofilm formation because motility is important for initial attachment to a surface.
Download or read book Bacterial Adhesion written by Madilyn Fletcher and published by John Wiley & Sons. This book was released on 1996-09-21 with total page 378 pages. Available in PDF, EPUB and Kindle. Book excerpt: BACTERIAL ADHESION Molecular and Ecological Diversity Edited byMadilyn Fletcher Over the last twenty years, research has revealed the enormouscomplexity underlying the phenomenon of bacterial adhesion. Theinitial research goal was to understand the mechanism of attachmentand its effects on the bacteria as well as the host. As researchprogressed, however, it became evident that many differentattachment mechanisms exist. These diverse forms of adhesion arethe results of numerous evolutionary pressures, and each may bepart of a larger behavioral strategy. This comprehensive overview details how diversity in habitat andecological requirements has led to enormous variety in adhesivecell components, underlying genetic determinants, and behavioralstrategies. It presents the latest research on adhesion mechanismsand strategies found in diverse environments and microorganisms,including the new environment of biomaterials. Bacterial Adhesion: Molecular and Ecological Diversity examinesadhesion as a strategy for nutrient access and as a phase in thecomplex behavior of life cycle processes. It covers the latestresearch and innovative approaches in the field, including: * Conceptual advances in research on the adhesion of bacteria tooral surfaces * Enhancing colonization in a fluctuating environment * The cellulosome: a cell-surface organelle for the adhesion to anddegradation of cellulose * Pseudomonas aeruginosa--versatile attachment mechanisms * Sensing, response, and adaptation to surfaces * Myxococcus coadhesion and role in the life cycle Edited by a leading authority on bacterial adhesion and featuringcontributions from the field's leading experts, this book speaks toresearchers in all areas of microbiology, biotechnology,environmental technology, and environmental science, as well asurology, immunology, and infectious diseases. Bacterial Adhesion: Molecular and Ecological Diversity is thelatest addition to the Wiley Series in Ecological and AppliedMicrobiology. Recent books in the series include: * Microbial Transformation and Degradation of Toxic OrganicChemicals edited by Lily Y. Young and Carl E. Cerniglia * Wastewater Microbiology by Gabriel Bitton * Environmental Microbiology edited by Ralph Mitchell * Biotechnology in Plant Disease Control edited by Ilan Chet * Antarctic Microbiology edited by E. Imre Friedmann * Effects of Acid Rain on Forest Processes edited by Douglas L.Godbold and Aloys Huttermann
Download or read book Synthetic Biology of Cyanobacteria written by Weiwen Zhang and published by Springer. This book was released on 2018-08-08 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume highlights recent breakthroughs in the interdisciplinary areas of synthetic biology, metabolic engineering and bioprocess engineering for the production of green chemicals. It also presents practical experimental and computational tools for the design, construction and manipulation of cyanobacteria cell factories. The respective contributions cover new technologies in the field, such as novel genetic transformation techniques and bioinformatics analysis methods and address various aspects of cyanobacterial synthetic biology, offering a valuable resource for students and researchers in the fields of industry microbiology and biomedical engineering.
Download or read book Biomedical Index to PHS supported Research written by and published by . This book was released on 1990 with total page 1060 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Recombinational Repair of DNA Damage written by Andrei Kuzminov and published by Landes Bioscience. This book was released on 1996 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Cumulated Index Medicus written by and published by . This book was released on 1996 with total page 1340 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Molecular Biology and Pathogenicity of Mycoplasmas written by Shmuel Razin and published by Springer Science & Business Media. This book was released on 2007-05-08 with total page 574 pages. Available in PDF, EPUB and Kindle. Book excerpt: was the result of the efforts of Robert Cleverdon. The rapidly developing discipline of molecular biology and the rapidly expanding knowledge of the PPLO were brought together at this meeting. In addition to the PPLO specialists, the conference invited Julius Marmur to compare PPLO DNA to DNA of other organisms; David Garfinkel, who was one of the first to develop computer models of metabolism; Cyrus Levinthal to talk about coding; and Henry Quastler to discuss information theory constraints on very small cells. The conference was an announcement of the role of PPLO in the fundamental understanding of molecular biology. Looking back 40-some years to the Connecticut meeting, it was a rather bold enterprise. The meeting was international and inter-disciplinary and began a series of important collaborations with influences resonating down to the present. If I may be allowed a personal remark, it was where I first met Shmuel Razin, who has been a leading figure in the emerging mycoplasma research and a good friend. This present volume is in some ways the fulfillment of the promise of that early meeting. It is an example of the collaborative work of scientists in building an understanding of fundamental aspects of biology.
Download or read book Stress Induced Mutagenesis written by David Mittelman and published by Springer Science & Business Media. This book was released on 2013-03-12 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: The discovery of stress-induced mutagenesis has changed ideas about mutation and evolution, and revealed mutagenic programs that differ from standard spontaneous mutagenesis in rapidly proliferating cells. The stress-induced mutations occur during growth-limiting stress, and can include adaptive mutations that allow growth in the otherwise growth-limiting environment. The stress responses increase mutagenesis specifically when cells are maladapted to their environments, i.e. are stressed, potentially accelerating evolution then. The mutation mechanism also includes temporary suspension of post-synthesis mismatch repair, resembling mutagenesis characteristic of some cancers. Stress-induced mutation mechanisms may provide important models for genome instability underlying some cancers and genetic diseases, resistance to chemotherapeutic and antibiotic drugs, pathogenicity of microbes, and many other important evolutionary processes. This book covers pathways of stress-induced mutagenesis in all systems. The principle focus is mammalian systems, but much of what is known of these pathways comes from non-mammalian systems.
Download or read book Regulation of Gene Expression in Escherichia coli written by E. C. C. Lin and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 1010 pages. Available in PDF, EPUB and Kindle. Book excerpt: This up-to-date guide focuses on the understanding of key regulatory mechanisms governing gene expression in Escherichia coli. Studies of E. coli not only provide the first models of gene regulation, but research continues to yield different control mechanisms.
Download or read book Microbial Stress From Model Organisms to Applications in Food Microbiotechnology and Medicine written by Aleksandra P. Djukic-Vukovic and published by Frontiers Media SA. This book was released on 2022-07-27 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Genetic Toxicology Testing written by Ray Proudlock and published by Academic Press. This book was released on 2016-05-28 with total page 458 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genetic Toxicology Testing: A Laboratory Manual presents a practical guide to genetic toxicology testing of chemicals in a GLP environment. The most commonly used assays are described, from laboratory and test design to results analysis. In a methodical manner, individual test methods are described step-by-step, along with equipment, suggested suppliers, recipes for reagents, and evaluation criteria. An invaluable resource in the lab, this book will help to troubleshoot any assay problems you may encounter to optimise quality and efficiency in your genetic toxicology tests. Genetic Toxicology Testing: A Laboratory Manual is an essential reference for those new to the genetic toxicology laboratory, or anyone involved in setting up their own. - Offers practical and consistent guidance on the most commonly-performed tests and procedures in a genetic toxicology lab - Describes standard genetic toxicology assays, their methodology, reagents, suppliers, and analysis of their results - Includes guidance on general approaches: formulation for in vitro assays, study monitoring, and Good Laboratory Practice (GLP) - Serves as an essential reference for those new to the genetic toxicology laboratory, or anyone involved in setting up their own lab
Download or read book Metabolic Engineering written by L. Eggeling and published by Springer. This book was released on 1996-04-04 with total page 216 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Gene Cloning and Manipulation written by Christopher Howe and published by Cambridge University Press. This book was released on 2007-07-12 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Updated to reflect advances in the field, this introduction provides a broad, but concise, coverage of recombinant DNA techniques. Written for advanced undergraduates, graduates and scientists who want to use this technology, emphasis is placed on the concepts underlying particular types of cloning vectors to aid understanding and to enable readers to devise suitable strategies for novel experimental situations. An introduction to the basic biochemical principles is presented first. Then PCR and cloning using E. coli hosts and plasmid, phage and hybrid vectors are described, followed by the generation and screening of libraries and how to modify, inactivate or express cloned sequences. Finally genetic manipulation in a range of other organisms is discussed, including other bacteria, fungi, algae and plants, insects and mammals. A series of 'real-life' biological problems are also presented to enable readers to assess their understanding of the material and to prepare for exams.
Download or read book Genetic Control of Malaria and Dengue written by Zach N. Adelman and published by Academic Press. This book was released on 2015-10-15 with total page 487 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genetic Control of Malaria and Dengue focuses on the knowledge, technology, regulation and ethics of using genetically modified mosquitoes to interrupt the transmission of important vector-borne diseases including Malaria. It contains coverage of the current state of knowledge of vector-borne diseases and how they are currently controlled; vaccine, drug and insecticide development; various strategies for altering the genome of mosquitoes in beneficial ways; and the regulatory, ethical and social environment concerning these strategies. For more than five decades, the prospect of using genetically-modified mosquitoes to control vector-borne disease transmission has been a purely hypothetical scenario. We simply did not have the technology or basic knowledge to be able to do it. With the explosion of field trials and potential interventions in development, Genetic Control of Malaria and Dengue provides a comprehensive overview of research in genetics, microbiology, virology, and ecology involved in the development and implementation of genetic modification programs for virus and disease control. This book is meant to provide a practical guide to researchers, regulators and the general public about how this technology actually works, how it can be improved, and what is still unknown. - Includes coverage of vectorial capacity, critical to understanding vector-borne disease transmission - Provides a summary of the concepts of both population suppression and population replacement - Contains pivotal coverage of ethical and ecological ramifications of genetics-based control strategies
Download or read book Plant Mutation Breeding and Biotechnology written by Q. Y. Shu and published by CABI. This book was released on 2012 with total page 612 pages. Available in PDF, EPUB and Kindle. Book excerpt: Abstract: This book presents contemporary information on mutagenesis in plants and its applications in plant breeding and research. The topics are classified into sections focusing on the concepts, historical development and genetic basis of plant mutation breeding (chapters 1-6); mutagens and induced mutagenesis (chapters 7-13); mutation induction and mutant development (chapters 14-23); mutation breeding (chapters 24-34); or mutations in functional genomics (chapters 35-41). This book is an essential reference for those who are conducting research on mutagenesis as an approach to improving or modifying a trait, or achieving basic understanding of a pathway for a trait --.
Download or read book Genetics Abstracts written by and published by . This book was released on 2001 with total page 560 pages. Available in PDF, EPUB and Kindle. Book excerpt:
