Download or read book The Ecological Genomics of Fungi written by Francis Martin and published by John Wiley & Sons. This book was released on 2013-12-31 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique book covers a broad diversity of fungal systems and provides unique insight into the functions of those fungi in various ecosystems – from soil, to plant, to human. Bringing together fungal genomic information on a variety of lifestyles and traits, the book covers saprotrophism, pathogenesis (including biotrophs, hemibiotrophs, necrotrophs) and symbiosis. Advances in high-throughput sequencing now offer unprecedented opportunities for identification of novel key molecular mechanisms controlling plant-microbe interactions, evolution of fungi and developmentally- and ecologically-relevant traits, this book explores how these massive streams of fungal sequences can be exploited to gain a deeper understanding of the evolution of fungi and their ecological role. Although tremendous progress has been made in recent years in fungal genomics, thanks to the sequencing of over one hundred fungal genomes, until now no book has used this information to bridge fungal genomics, molecular ecology and ecology. Edited by a recognized leader in fungal genomics and soil metagenomics with over a decade of experience, Genomics & Metagenomics for Harnessing the Ecology of Fungi will be a useful resource for the experienced as well as the new researchers entering the field.
Download or read book Ecological Genomics of Fungi written by Wayne M. Jurick II and published by . This book was released on 2018-06 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungi are cryptic, understudied and hyperdiverse organisms. Fungi are poorly documented organisms and the phylogenetic relationships within the kingdom are not yet fully understood, but recent efforts have been shedding light on the evolutionary history of the Fungi. Fungi have been known and used by humans for centuries, but mycology traces beginnings to the 18th century, with the development of the microscope. While much has been discovered since then, fungi remain today a cryptic and understudied group of organisms. The tools of molecular biology and genomics can help us meet this challenge. Over the past decades, genomics, and genome sequencing in particular, have emerged as powerful tools for biological research. In the last few years, due to the introduction of the next-generation sequencing (NGS) technologies, these tools went through dramatic transformations. Ecological Genomics of Fungi brings together studies related to pathogenic fungi, fungal biology, and all other aspects of fungal research. It covers a broad diversity of fungal systems and provides unique insight into the functions of those fungi in various ecosystems - from soil, to plant, to human. It also discusses tools, applications, and the most recent developments available to explore the biology of soil fungi at the molecular level. This book addresses the wonders of fungal diversity, including recent advances on the understanding of the evolution of the kingdom Fungi, approaches to documenting and interpreting fungal diversity, and current efforts concerning fungal conservation. The book also includes investigations of fungi and their traditional allies that relate structure and function to growth, reproduction, morphogenesis, differentiation, its role as pathogen and parasites, its applications in various fields like industry and agriculture and medicinal uses.
Download or read book Ecological Genomics written by Christian R. Landry and published by Springer Science & Business Media. This book was released on 2013-11-25 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.
Download or read book Genomics of Soil and Plant Associated Fungi written by Benjamin A. Horwitz and published by Springer Science & Business Media. This book was released on 2013-08-30 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume addresses the similarities and also the differences in the genomes of soil saprophytes, symbionts, and plant pathogens by using examples of fungal species to illustrate particular principles. It analyzes how the specific interactions with the hosts and the influence of the environment may have shaped genome evolution. The relevance of fungal genetic research and biotechnological applications is shown for areas such as plant pathogenesis, biomass degradation, litter decomposition, nitrogen assimilation, antibiotic production, mycoparasitism, energy, ecology, and also for soil fungi turning to human pathogens. In addition to the model organisms Neurospora and Aspergillus, the following species are covered providing a view of pathogens and mutualists: Trichoderma, Fusarium oxysporum, Cochliobolus heterostrophus, Penicillium chrysogenum, Rhizopus oryzae, Podospora anserina, and species belonging to Agaricomycetes, Archaeorhizomycetes and Magnaporthaceae. Ecology and potential applications have guided the choice of fungal genes to be studied and it will be fascinating to follow the trends of future sequencing projects.
Download or read book Fungal Genomics written by Ronald P. de Vries and published by Humana. This book was released on 2019-06-21 with total page 291 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume details protocols covering nearly all aspects of fungal genomics. New and updated chapters guide the reader through experimental genomics, biotechnologies, and the analysis and processing of data. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Fungal Genomics : Methods and Protocols, Second Edition aims to ensure successful results in the further study of this vital field.
Download or read book An Introduction to Ecological Genomics written by Nico M. van Straalen and published by Oxford University Press. This book was released on 2012 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models.
Download or read book Oxford Textbook of Medical Mycology written by Christopher C. Kibbler and published by Oxford University Press. This book was released on 2017-12-14 with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Oxford Textbook of Medical Mycology is a comprehensive reference text which brings together the science and medicine of human fungal disease. Written by a leading group of international authors to bring a global expertise, it is divided into sections that deal with the principles of mycology, the organisms, a systems based approach to management, fungal disease in specific patient groups, diagnosis, and treatment. The detailed clinical chapters take account of recent international guidelines on the management of fungal disease. With chapters covering recent developments in taxonomy, fungal genetics and other 'omics', epidemiology, pathogenesis, and immunology, this textbook is well suited to aid both scientists and clinicians. The extensive illustrations, tables, and in-depth coverage of topics, including discussion of the non-infective aspects of allergic and toxin mediated fungal disease, are designed to aid the understanding of mechanisms and pathology, and extend the usual approach to fungal disease. This textbook is essential reading for microbiologists, research scientists, infectious diseases clinicians, respiratory physicians, and those managing immunocompromised patients. Part of the Oxford Textbook in Infectious Disease and Microbiology series, it is also a useful companion text for students and trainees looking to supplement mycology courses and microbiology training.
Download or read book Microbial Environmental Genomics MEG written by Francis Martin and published by Springer Nature. This book was released on 2022-12-15 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume guides researchers on how to characterize, image rare, and hitherto unknown taxa and their interactions, to identify new functions and biomolecules and to understand how environmental changes condition the activity and the response of the organisms living with us and in our environment. Chapters cover different organism types (i.e., archaea, bacteria, fungi, protest, microfauna and microeukaryotes) and propose detailed protocols to produce high quality DNA, to analyse active microbial communities directly involved in complex interactions or processes through stable isotope probing, to identify and characterize of new functional genes, to image in situ interactions and to apply bioinformatics analysis tools to complex metagenomic or RNAseq sequence data. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Microbial Environmental Genomics (MEG): Methods and Protocols, Second Edition aims to serve as a primary research reference for researchers in microbiology working to in the expanding field of molecular ecology and environmental genomics.
Download or read book Fungal Genomics written by and published by Elsevier. This book was released on 2004-02-25 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: Research in the genomics of a handful of fungi has matured at an unprecedented rate allowing comprehensive review. Developments in fungal genomics should be of great significance to new strategies in fields where disciplinary crossovers of fungal genomics, genes and their regulation, expression, and engineering will have a strong impact in dealing with agriculture, foods, natural resources, life sciences, biotechnology, informatics, metabolomics, pharmaceuticals and bioactive compounds. This volume analyzes the commonly used molecular markers systems, and elaborates the development of biochemical genetics, which provides a model system that established the relationship between genes and enzymes. Current knowledge about the genomic and genetic variability of Candida albicans, the polymorphic fungus that is an opportunistic human pathogen of increasing medical importance, has been covered in detail. Current understanding of the genetics and functional genomic analysis of the most important fungal pathogens of staple food crops, rice and wheat among others is covered including chapters dealing with the genomics of economically important fungi such asMagnaporthe grisea, Aspergillus, Fusarium, Penicillium, Trichoderma, Rhizoctonia, Mycosphaerella graminicola, and entomopathogenic fungi. With several thousand recent citations, it is hoped that volume four will serve as a useful reference for knowledgeable veterans and beginners as well as those crossing disciplinary boundaries into the exciting field of biotechnology, genomics and bioinformatics of fungi.
Download or read book The Fungal Kingdom written by Joseph Heitman and published by John Wiley & Sons. This book was released on 2020-07-10 with total page 1136 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungi research and knowledge grew rapidly following recent advances in genetics and genomics. This book synthesizes new knowledge with existing information to stimulate new scientific questions and propel fungal scientists on to the next stages of research. This book is a comprehensive guide on fungi, environmental sensing, genetics, genomics, interactions with microbes, plants, insects, and humans, technological applications, and natural product development.
Download or read book Evolution of Fungi and Fungal Like Organisms written by Stefanie Pöggeler and published by Springer Nature. This book was released on 2023-09-12 with total page 331 pages. Available in PDF, EPUB and Kindle. Book excerpt: Sequence analyses of numerous fungal genomes over the past two decades have provided us with extensive insights into the phylogenetic relationships of fungi and the distribution of genes and their inferred functions, across the fungal kingdom. It is now possible to answer questions about the origin of the fungal kingdom and fungal evolution with an analytical precision that was not possible before. This fully revised and updated 2nd edition of The Mycota, Vol. 14, addresses major aspects of fungal evolution. The book is divided into four sections covering the following main topics: • Evolutionary roots of fungi • Evolution of pathogenic strategies • Evolution of mutualistic interactions • Evolution of metabolism and development in fungi Fungi are among the oldest eukaryotic groups in the living world. The aim of this book is to better understand the history and importance of fungi, as well as the characteristics that distinguish them from their sister group, the metazoans, and other fungus-like groups such as the slime molds and oomycetes. Many fungal species are important pathogens of animals and plants and have distinct but parallel pathogenicity strategies. Mutualistic interactions of fungi with other organisms are crucial for their survival in different ecological niches and have a great influence on their evolution and the design of their genomes. Metabolism is one of the most important features of life, and the diversity of metabolic processes is best understood by considering evolution. Studies of fungal metabolism have traditionally focused on metabolites of particular interest, namely mycotoxins, pathogenicity factors, antibiotics, and other compounds with interspecific activity. This volume will be of great interest to mycologists, evolutionary biologists, and fungal geneticists, as well as to lecturers and students of microbiology and mycology.
Download or read book Fungal Phylogenetics and Phylogenomics written by and published by Academic Press. This book was released on 2017-11-17 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungal Phylogenetics and Phylogenomics, Volume 99, the latest release in the Advances in Genetics series, presents users with new chapters that delve into such topics as the Advances of fungal phylogenomics and the impact on fungal systematics, Data crunching for fungal phylogenomics: insights into data collection and phylogenetic inference based on genome data for fungi, Genomic and epigenomic traits of emerging fungal pathogens, Advances in fungal gene cluster diversity and evolution, Phylogenomics of Fusarium oxysporum species complex, Phylogenomic analyses of pathogenic yeasts, and the Phylogenetics and phylogenomics of rust fungi. The series continually publishes important reviews of the broadest interest to geneticists and their colleagues in affiliated disciplines, critically analyzing future directions. Critically analyzes future directions for the study of clinical genetics Written and edited by recognized leaders in the field Presents new medical breakthroughs that are occurring as a result of advances in our knowledge of genetics
Download or read book Fungi written by Kevin Kavanagh and published by John Wiley & Sons. This book was released on 2011-08-04 with total page 315 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungi: Biology and Applications, Second Edition provides a comprehensive treatment of fungi, covering biochemistry, genetics and the medical and economic significance of these organisms at introductory level. With no prior knowledge of the subject assumed, the opening chapters offer a broad overview of the basics of fungal biology, in particular the physiology and genetics of fungi and also a new chapter on the application of genomics to fungi. Later chapters move on to include more detailed coverage of topics such as antibiotic and chemical commodities from fungi, new chapters on biotechnological use of fungal enzymes and fungal proteomics, and fungal diseases of humans, antifungal agents for use in human therapy and fungal pathogens of plants.
Download or read book The Fungi written by Michael J. Carlile and published by Gulf Professional Publishing. This book was released on 2001-01-09 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new edition of The Fungi provides a comprehensive introduction to the importance of fungi in the natural world and in practical applications, from a microbiological perspective.
Download or read book Fungi in the Environment written by Geoffrey Gadd and published by Cambridge University Press. This book was released on 2007-04-12 with total page 367 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fungi are of fundamental importance in the terrestrial environment. They have roles as decomposers, plant pathogens, symbionts, and in elemental cycles. Fungi are often dominant, and in soil can comprise the largest pool of biomass (including other microorganisms and invertebrates). They also play a role in maintenance of soil structure due to their filamentous growth habit and exopolymer production. Despite their important roles in the biosphere, fungi are frequently neglected within broader environmental and microbiological spheres. Additionally, mycological interests can be somewhat fragmented between traditional subject boundaries. This multi-disciplinary volume explores the roles and importance of fungi in the environment. Particular emphasis is given to major research advances made in recent years as a result of molecular and genomic approaches, and in cell imaging and biology. Drawing together microbiologists, mycologists, and environmental scientists, this work is a unique account of modern environmental mycology, and a pivotal contribution to the field.
Download or read book The Fungal Community written by John Dighton and published by CRC Press. This book was released on 2017-03-16 with total page 652 pages. Available in PDF, EPUB and Kindle. Book excerpt: "...a number of chapters provide excellent summaries of the modern methods available for studying fungal ecology, along with those more traditional methods that are still extremely valuable...overall it is a hugely valuable compendium of fungal ecology research. It is a must for the library shelf." -Lynne Boddy, Cardiff University, UK, Mycological Research, 2006 "These 44 chapters are an excellent starting point for anyone interested in fungal communities, in the broadest sense of the term. It is a book for dipping into...may be the last comprehensive treatment of fungal communities before the molecular revolution." -Meriel Jones, University of Liverpool, UK, Microbiology Today "... the scope of the work is tremendous. ... Excellent chapters providing overviews of methods ... provide a snap shot of the current approaches used to understand fungal communities at several levels of organization. This book should probably be on the shelf of every student of mycology, and many ecologists too. For all students, this book should be a valuable resource and source of inspiration." -Daniel Henk, Imperial College Faculty of Medicine, London, in Inoculum, Vol. 59, No. 3, May 2008 "Thorough taxonomic and subject indices further aid the reader in navigating through multiple authors’ treatments of subjects of interest." - Anthony Amend, Department of Botany, University of Hawaii at Manoa in Economic Botany, V. 61 In all subjects in science, new findings and the use of new technologies allow us to develop an ever-greater understanding of our world. Expanded and updated coverage in the fourth edition includes: Adds new sections on Integrating Genomics and Metagenomics into Community Analysis, Recent Advances in Fungal Endophyte Research, Fungi in the Built Environment, and Fungal Signaling and Communication Includes a broader treatment of fungal communities in natural ecosystems with in-depth coverage of fungal adaptations to stress and conservation Expands coverage of the influence of climate change on fungi and the role of fungi in organically polluted ecosystems Includes contributions from scientists from 20 nations to illustrate a true global approach for bridging gaps between ecological concepts and mycology
Download or read book Fungi written by and published by Elsevier. This book was released on 2014-05-19 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Botanical Research publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences. Currently in its 70th volume, the series features several reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology and ecology. This thematic volume features reviews on fungi, including pathogenic fungi, symbiotic fungi, saprotrophic fungi and population genomics. Publishes in-depth and up-to-date reviews on a wide range of topics in plant sciences Features a wide range of reviews by recognized experts on all aspects of plant genetics, biochemistry, cell biology, molecular biology, physiology, and ecology Volume features reviews on fungi, including pathogenic fungi, symbiotic fungi, saprotrophic fungi, and population genomics
