Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-21 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Download or read book Current Developments in Mathematical Biology written by Kazem Mahdavi and published by World Scientific. This book was released on 2007 with total page 181 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a collection of papers on various areas of current interest in mathematical biology, such as epidemic disease modeling, including the effects of vaccination and strain replacement; immunology, such as T-Cell dynamics and the mechanism of phagocytosis; knot theory; DNA computation; and Boolean networks.
Download or read book Analysis and Control of Boolean Networks written by Daizhan Cheng and published by Springer Science & Business Media. This book was released on 2010-11-23 with total page 474 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Download or read book Information Processing and Biological Systems written by Samuli Niiranen and published by Springer Science & Business Media. This book was released on 2011-03-10 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt: Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Download or read book Dynamics of Complex Autonomous Boolean Networks written by David P. Rosin and published by Springer. This book was released on 2014-12-31 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis focuses on the dynamics of autonomous Boolean networks, on the basis of Boolean logic functions in continuous time without external clocking. These networks are realized with integrated circuits on an electronic chip as a field programmable gate array (FPGA) with roughly 100,000 logic gates, offering an extremely flexible model system. It allows fast and cheap design cycles and large networks with arbitrary topologies and coupling delays. The author presents pioneering results on theoretical modeling, experimental realization, and selected applications. In this regard, three classes of novel dynamic behavior are investigated: (i) Chaotic Boolean networks are proposed as high-speed physical random number generators with high bit rates. (ii) Networks of periodic Boolean oscillators are home to long-living transient chimera states, i.e., novel patterns of coexisting domains of spatially coherent (synchronized) and incoherent (desynchronized) dynamics. (iii) Excitable networks exhibit cluster synchronization and can be used as fast artificial Boolean neurons whose spiking patterns can be controlled. This work presents the first experimental platform for large complex networks, which will facilitate exciting future developments.
Download or read book Exploring Discrete Dynamics written by Andrew Wuensche and published by Luniver Press. This book was released on 2011 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt: EXPLORING DISCRETE DYNAMICS is a comprehensive guide to studying cellular automata and discrete dynamical networks with the classic software Discrete Dynamics Laboratory (DDLab). These collective networks are at the core of complexity and emergent self-organisation. With interactive graphics, DDLab is able to explore an huge diversity of behaviour -- mostly terra incognita -- space-time patters, but also basins of attraction, mathematical objects representing the convergent flow in state-space. Applications range within physics, mathematics, biology, cognition, society, economics and computation, and more specifically in neural and genetic networks, artificial life, and a theory of memory.
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Download or read book The Complexity of Boolean Networks written by Paul E. Dunne and published by . This book was released on 1988 with total page 526 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book The Local Information Dynamics of Distributed Computation in Complex Systems written by Joseph T. Lizier and published by Springer Science & Business Media. This book was released on 2012-11-06 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: The nature of distributed computation in complex systems has often been described in terms of memory, communication and processing. This thesis presents a complete information-theoretic framework to quantify these operations on information (i.e. information storage, transfer and modification), and in particular their dynamics in space and time. The framework is applied to cellular automata, and delivers important insights into the fundamental nature of distributed computation and the dynamics of complex systems (e.g. that gliders are dominant information transfer agents). Applications to several important network models, including random Boolean networks, suggest that the capability for information storage and coherent transfer are maximised near the critical regime in certain order-chaos phase transitions. Further applications to study and design information structure in the contexts of computational neuroscience and guided self-organisation underline the practical utility of the techniques presented here.
Download or read book Complex Systems Dynamics volume Ii written by Gerard Weisbuch and published by CRC Press. This book was released on 2019-03-01 with total page 209 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an accessible introduction to complex systems viewed as networks of automata, using primarily examples drawn from the physics of disordered systems, neural networks, and the origins of life. It is helpful for readers with a university education in science or engineering.
Download or read book Gene Network Inference written by Alberto Fuente and published by Springer Science & Business Media. This book was released on 2014-01-03 with total page 135 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents recent methods for Systems Genetics (SG) data analysis, applying them to a suite of simulated SG benchmark datasets. Each of the chapter authors received the same datasets to evaluate the performance of their method to better understand which algorithms are most useful for obtaining reliable models from SG datasets. The knowledge gained from this benchmarking study will ultimately allow these algorithms to be used with confidence for SG studies e.g. of complex human diseases or food crop improvement. The book is primarily intended for researchers with a background in the life sciences, not for computer scientists or statisticians.
Download or read book Reservoir Computing written by Kohei Nakajima and published by Springer Nature. This book was released on 2021-08-05 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first comprehensive book about reservoir computing (RC). RC is a powerful and broadly applicable computational framework based on recurrent neural networks. Its advantages lie in small training data set requirements, fast training, inherent memory and high flexibility for various hardware implementations. It originated from computational neuroscience and machine learning but has, in recent years, spread dramatically, and has been introduced into a wide variety of fields, including complex systems science, physics, material science, biological science, quantum machine learning, optical communication systems, and robotics. Reviewing the current state of the art and providing a concise guide to the field, this book introduces readers to its basic concepts, theory, techniques, physical implementations and applications. The book is sub-structured into two major parts: theory and physical implementations. Both parts consist of a compilation of chapters, authored by leading experts in their respective fields. The first part is devoted to theoretical developments of RC, extending the framework from the conventional recurrent neural network context to a more general dynamical systems context. With this broadened perspective, RC is not restricted to the area of machine learning but is being connected to a much wider class of systems. The second part of the book focuses on the utilization of physical dynamical systems as reservoirs, a framework referred to as physical reservoir computing. A variety of physical systems and substrates have already been suggested and used for the implementation of reservoir computing. Among these physical systems which cover a wide range of spatial and temporal scales, are mechanical and optical systems, nanomaterials, spintronics, and quantum many body systems. This book offers a valuable resource for researchers (Ph.D. students and experts alike) and practitioners working in the field of machine learning, artificial intelligence, robotics, neuromorphic computing, complex systems, and physics.
Download or read book Unifying Themes in Complex Systems X written by Dan Braha and published by . This book was released on 2021 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The International Conference on Complex Systems (ICCS) offers a unique interdisciplinary venue for researchers from the physical and biological sciences, social sciences, psychology and cognitive science, engineering, medicine, human systems, and global systems. This proceedings volume gathers selected papers from the conference. The New England Complex Systems Institute (NECSI) has been instrumental in the development of complex systems science and its applications. NECSI pursues research, education, knowledge dissemination, and community development efforts around the world to promote the study of complex systems and its application for the benefit of society. NECSI hosts the International Conference on Complex Systems and publishes the NECSI Book. .
Download or read book Global Dynamics Of Cellular Automata written by Andrew Wuensche and published by Andrew Wuensche. This book was released on 1992-09-20 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book introduces a powerful new global perspective for the study of discrete dynamical systems. After first looking at the unique trajectory of a system's future, an algorithm is also presented that directly computes the multiple merging trajectories that may have constituted the system's past. A given set of cellular parameters will, in a sense, crystallize state space into a set of basins of attraction that will typically have the topology of branching trees rooted on attractor cycles. The book makes accessible the explicit portraits of these mathematical objects through computer-generated graphics. (Book/disk package disk requires an 80286, or higher, IBM PC or compatible with 640K of memory, VGA graphics, and DOS 2.0 or higher.
Download or read book Neural and Automata Networks written by E. Goles and published by Springer Science & Business Media. This book was released on 2013-03-07 with total page 259 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Et moi ..., si j'avait Sll comment en revenir. One sennce mathematics has rendered the human race. It has put common sense back je n'y serais point alle.' Jules Verne whe", it belongs, on the topmost shelf next to the dusty canister labelled 'discarded non- The series is divergent; therefore we may be smse'. able to do something with it. Eric T. Bell O. Heaviside Mathematics is a tool for thought. A highly necessary tool in a world where both feedback and non linearities abound. Similarly, all kinds of parts of mathematics serve as tools for other parts and for other sciences. Applying a simple rewriting rule to the quote on the right above one finds such statements as: 'One service topology has rendered mathematical physics .. .'; 'One service logic has rendered com puter science .. .'; 'One service category theory has rendered mathematics .. .'. All arguably true. And all statements obtainable this way form part of the raison d'!ltre of this series
Download or read book Spatial Dynamics Networks and Modelling written by Reggiani, A. Nijkamp, P. and published by Edward Elgar Publishing. This book was released on 2006-05-25 with total page 519 pages. Available in PDF, EPUB and Kindle. Book excerpt: 'the editors have done an excellent job in bringing together a comprehensive collection of cutting edge research findings on network theory. . .' - Sierdjan Koster, European Spatial Research and Policy
