Download or read book Deep learning to disease prediction on next generation sequencing and biomedical imaging data written by Saurav Mallik and published by Frontiers Media SA. This book was released on 2023-08-31 with total page 144 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Statistical Analysis of Next Generation Sequencing Data written by Somnath Datta and published by Springer. This book was released on 2014-07-03 with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next Generation Sequencing (NGS) is the latest high throughput technology to revolutionize genomic research. NGS generates massive genomic datasets that play a key role in the big data phenomenon that surrounds us today. To extract signals from high-dimensional NGS data and make valid statistical inferences and predictions, novel data analytic and statistical techniques are needed. This book contains 20 chapters written by prominent statisticians working with NGS data. The topics range from basic preprocessing and analysis with NGS data to more complex genomic applications such as copy number variation and isoform expression detection. Research statisticians who want to learn about this growing and exciting area will find this book useful. In addition, many chapters from this book could be included in graduate-level classes in statistical bioinformatics for training future biostatisticians who will be expected to deal with genomic data in basic biomedical research, genomic clinical trials and personalized medicine. About the editors: Somnath Datta is Professor and Vice Chair of Bioinformatics and Biostatistics at the University of Louisville. He is Fellow of the American Statistical Association, Fellow of the Institute of Mathematical Statistics and Elected Member of the International Statistical Institute. He has contributed to numerous research areas in Statistics, Biostatistics and Bioinformatics. Dan Nettleton is Professor and Laurence H. Baker Endowed Chair of Biological Statistics in the Department of Statistics at Iowa State University. He is Fellow of the American Statistical Association and has published research on a variety of topics in statistics, biology and bioinformatics.

Download or read book Deep Learning for Biomedical Applications written by Utku Kose and published by CRC Press. This book was released on 2021-07-20 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a detailed reference on biomedical applications using Deep Learning. Because Deep Learning is an important actor shaping the future of Artificial Intelligence, its specific and innovative solutions for both medical and biomedical are very critical. This book provides a recent view of research works on essential, and advanced topics. The book offers detailed information on the application of Deep Learning for solving biomedical problems. It focuses on different types of data (i.e. raw data, signal-time series, medical images) to enable readers to understand the effectiveness and the potential. It includes topics such as disease diagnosis, image processing perspectives, and even genomics. It takes the reader through different sides of Deep Learning oriented solutions. The specific and innovative solutions covered in this book for both medical and biomedical applications are critical to scientists, researchers, practitioners, professionals, and educations who are working in the context of the topics.

Download or read book Computational Methods for Next Generation Sequencing Data Analysis written by Ion Mandoiu and published by John Wiley & Sons. This book was released on 2016-10-03 with total page 460 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduces readers to core algorithmic techniques for next-generation sequencing (NGS) data analysis and discusses a wide range of computational techniques and applications This book provides an in-depth survey of some of the recent developments in NGS and discusses mathematical and computational challenges in various application areas of NGS technologies. The 18 chapters featured in this book have been authored by bioinformatics experts and represent the latest work in leading labs actively contributing to the fast-growing field of NGS. The book is divided into four parts: Part I focuses on computing and experimental infrastructure for NGS analysis, including chapters on cloud computing, modular pipelines for metabolic pathway reconstruction, pooling strategies for massive viral sequencing, and high-fidelity sequencing protocols. Part II concentrates on analysis of DNA sequencing data, covering the classic scaffolding problem, detection of genomic variants, including insertions and deletions, and analysis of DNA methylation sequencing data. Part III is devoted to analysis of RNA-seq data. This part discusses algorithms and compares software tools for transcriptome assembly along with methods for detection of alternative splicing and tools for transcriptome quantification and differential expression analysis. Part IV explores computational tools for NGS applications in microbiomics, including a discussion on error correction of NGS reads from viral populations, methods for viral quasispecies reconstruction, and a survey of state-of-the-art methods and future trends in microbiome analysis. Computational Methods for Next Generation Sequencing Data Analysis: Reviews computational techniques such as new combinatorial optimization methods, data structures, high performance computing, machine learning, and inference algorithms Discusses the mathematical and computational challenges in NGS technologies Covers NGS error correction, de novo genome transcriptome assembly, variant detection from NGS reads, and more This text is a reference for biomedical professionals interested in expanding their knowledge of computational techniques for NGS data analysis. The book is also useful for graduate and post-graduate students in bioinformatics.

Download or read book Deep Learning for Biomedical Data Analysis written by Mourad Elloumi and published by Springer Nature. This book was released on 2021-07-13 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first overview on Deep Learning (DL) for biomedical data analysis. It surveys the most recent techniques and approaches in this field, with both a broad coverage and enough depth to be of practical use to working professionals. This book offers enough fundamental and technical information on these techniques, approaches and the related problems without overcrowding the reader's head. It presents the results of the latest investigations in the field of DL for biomedical data analysis. The techniques and approaches presented in this book deal with the most important and/or the newest topics encountered in this field. They combine fundamental theory of Artificial Intelligence (AI), Machine Learning (ML) and DL with practical applications in Biology and Medicine. Certainly, the list of topics covered in this book is not exhaustive but these topics will shed light on the implications of the presented techniques and approaches on other topics in biomedical data analysis. The book finds a balance between theoretical and practical coverage of a wide range of issues in the field of biomedical data analysis, thanks to DL. The few published books on DL for biomedical data analysis either focus on specific topics or lack technical depth. The chapters presented in this book were selected for quality and relevance. The book also presents experiments that provide qualitative and quantitative overviews in the field of biomedical data analysis. The reader will require some familiarity with AI, ML and DL and will learn about techniques and approaches that deal with the most important and/or the newest topics encountered in the field of DL for biomedical data analysis. He/she will discover both the fundamentals behind DL techniques and approaches, and their applications on biomedical data. This book can also serve as a reference book for graduate courses in Bioinformatics, AI, ML and DL. The book aims not only at professional researchers and practitioners but also graduate students, senior undergraduate students and young researchers. This book will certainly show the way to new techniques and approaches to make new discoveries.

Download or read book Biomedical Image or Genomic Data Characterization and Radiogenomic Image omics written by Ming Fan and published by Frontiers Media SA. This book was released on 2022-09-27 with total page 183 pages. Available in PDF, EPUB and Kindle. Book excerpt: Much of the emphasis in discussions about personalized medicine has been focused on the molecular characterization of tissue samples using microarray technology. However, as genetic differ between and within tumors and are quite heterogeneous, these techniques are limited. Imaging is noninvasive and is often used in routine clinical practice for disease diagnosis, treatment, and prognosis. Imaging is useful to guide disease therapy by providing a more comprehensive view of the entire lesion and it can be used on an ongoing basis to monitor lesion growth and progression or its response to treatment. The imaging includes but not limited to ultrasound, X-ray, computed tomography (CT), magnetic resonance imaging (MRI), positron emission tomography (PET). Radiomics refers to the conversion of images to high dimensional data and the subsequent mining for characterization of biology and ultimately to improve disease management for patients. Radiogenomics investigates relationships between imaging features and genomics, which represents the correlation between the anatomical-histological level to the genomic level. With advanced artificial intelligence methods, especially deep learning, data processing, feature extraction and data integration have been greatly improved. The topic is about artificial intelligence methods in biomedical images and genomics data for disease diagnosis, treatment, and prognosis, as listed here: • Biomarker identification from biomedical images to predict disease diagnosis, treatment, and prognosis • Radiogenomics/image-omics in identifying imaging biomarkers associated with molecular characteristics of the disease. • Machine learning/deep learning methods in biomedical imaging or genomics for disease detection and precision medicine. • Prediction of histological characteristics of disease based on biomedical imaging. • Integration of radiomics and genomics features for disease diagnosis, prognosis, and prediction medicine • Multimodality images or multi-omics data integration methods

Download or read book Advances in Deep Learning for Medical Image Analysis written by Archana Mire and published by CRC Press. This book was released on 2022-04-28 with total page 168 pages. Available in PDF, EPUB and Kindle. Book excerpt: This reference text introduces the classical probabilistic model, deep learning, and big data techniques for improving medical imaging and detecting various diseases. The text addresses a wide variety of application areas in medical imaging where deep learning techniques provide solutions with lesser human intervention and reduced time. It comprehensively covers important machine learning for signal analysis, deep learning techniques for cancer detection, diabetic cases, skin image analysis, Alzheimer’s disease detection, coronary disease detection, medical image forensic, fetal anomaly detection, and plant phytology. The text will serve as a useful text for graduate students and academic researchers in the fields of electronics engineering, computer science, biomedical engineering, and electrical engineering.

Download or read book Applications of Machine Learning and Deep Learning on Biological Data written by Faheem Masoodi and published by CRC Press. This book was released on 2023-03-13 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: The automated learning of machines characterizes machine learning (ML). It focuses on making data-driven predictions using programmed algorithms. ML has several applications, including bioinformatics, which is a discipline of study and practice that deals with applying computational derivations to obtain biological data. It involves the collection, retrieval, storage, manipulation, and modeling of data for analysis or prediction made using customized software. Previously, comprehensive programming of bioinformatical algorithms was an extremely laborious task for such applications as predicting protein structures. Now, algorithms using ML and deep learning (DL) have increased the speed and efficacy of programming such algorithms. Applications of Machine Learning and Deep Learning on Biological Data is an examination of applying ML and DL to such areas as proteomics, genomics, microarrays, text mining, and systems biology. The key objective is to cover ML applications to biological science problems, focusing on problems related to bioinformatics. The book looks at cutting-edge research topics and methodologies in ML applied to the rapidly advancing discipline of bioinformatics. ML and DL applied to biological and neuroimaging data can open new frontiers for biomedical engineering, such as refining the understanding of complex diseases, including cancer and neurodegenerative and psychiatric disorders. Advances in this field could eventually lead to the development of precision medicine and automated diagnostic tools capable of tailoring medical treatments to individual lifestyles, variability, and the environment. Highlights include: Artificial Intelligence in treating and diagnosing schizophrenia An analysis of ML’s and DL’s financial effect on healthcare An XGBoost-based classification method for breast cancer classification Using ML to predict squamous diseases ML and DL applications in genomics and proteomics Applying ML and DL to biological data

Download or read book Deep Learning in Biomedical and Health Informatics written by M. A. Jabbar and published by CRC Press. This book was released on 2021-09-26 with total page 224 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a proficient guide on the relationship between Artificial Intelligence (AI) and healthcare and how AI is changing all aspects of the healthcare industry. It also covers how deep learning will help in diagnosis and the prediction of disease spread. The editors present a comprehensive review of research applying deep learning in health informatics in the fields of medical imaging, electronic health records, genomics, and sensing, and highlights various challenges in applying deep learning in health care. This book also includes applications and case studies across all areas of AI in healthcare data. The editors also aim to provide new theories, techniques, developments, and applications of deep learning, and to solve emerging problems in healthcare and other domains. This book is intended for computer scientists, biomedical engineers, and healthcare professionals researching and developing deep learning techniques. In short, the volume : Discusses the relationship between AI and healthcare, and how AI is changing the health care industry. Considers uses of deep learning in diagnosis and prediction of disease spread. Presents a comprehensive review of research applying deep learning in health informatics across multiple fields. Highlights challenges in applying deep learning in the field. Promotes research in ddeep llearning application in understanding the biomedical process. Dr.. M.A. Jabbar is a professor and Head of the Department AI&ML, Vardhaman College of Engineering, Hyderabad, Telangana, India. Prof. (Dr.) Ajith Abraham is the Director of Machine Intelligence Research Labs (MIR Labs), Auburn, Washington, USA. Dr.. Onur Dogan is an assistant professor at İzmir Bakırçay University, Turkey. Prof. Dr. Ana Madureira is the Director of The Interdisciplinary Studies Research Center at Instituto Superior de Engenharia do Porto (ISEP), Portugal. Dr.. Sanju Tiwari is a senior researcher at Universidad Autonoma de Tamaulipas, Mexico.

Download or read book Machine Learning Methods for Multi Omics Data Integration written by Abedalrhman Alkhateeb and published by Springer Nature. This book was released on 2023-12-15 with total page 171 pages. Available in PDF, EPUB and Kindle. Book excerpt: The advancement of biomedical engineering has enabled the generation of multi-omics data by developing high-throughput technologies, such as next-generation sequencing, mass spectrometry, and microarrays. Large-scale data sets for multiple omics platforms, including genomics, transcriptomics, proteomics, and metabolomics, have become more accessible and cost-effective over time. Integrating multi-omics data has become increasingly important in many research fields, such as bioinformatics, genomics, and systems biology. This integration allows researchers to understand complex interactions between biological molecules and pathways. It enables us to comprehensively understand complex biological systems, leading to new insights into disease mechanisms, drug discovery, and personalized medicine. Still, integrating various heterogeneous data types into a single learning model also comes with challenges. In this regard, learning algorithms have been vital in analyzing and integrating these large-scale heterogeneous data sets into one learning model. This book overviews the latest multi-omics technologies, machine learning techniques for data integration, and multi-omics databases for validation. It covers different types of learning for supervised and unsupervised learning techniques, including standard classifiers, deep learning, tensor factorization, ensemble learning, and clustering, among others. The book categorizes different levels of integrations, ranging from early, middle, or late-stage among multi-view models. The underlying models target different objectives, such as knowledge discovery, pattern recognition, disease-related biomarkers, and validation tools for multi-omics data. Finally, the book emphasizes practical applications and case studies, making it an essential resource for researchers and practitioners looking to apply machine learning to their multi-omics data sets. The book covers data preprocessing, feature selection, and model evaluation, providing readers with a practical guide to implementing machine learning techniques on various multi-omics data sets.

Download or read book Biomedical Data Mining for Information Retrieval written by Sujata Dash and published by John Wiley & Sons. This book was released on 2021-08-24 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: BIOMEDICAL DATA MINING FOR INFORMATION RETRIEVAL This book not only emphasizes traditional computational techniques, but discusses data mining, biomedical image processing, information retrieval with broad coverage of basic scientific applications. Biomedical Data Mining for Information Retrieval comprehensively covers the topic of mining biomedical text, images and visual features towards information retrieval. Biomedical and health informatics is an emerging field of research at the intersection of information science, computer science, and healthcare and brings tremendous opportunities and challenges due to easily available and abundant biomedical data for further analysis. The aim of healthcare informatics is to ensure the high-quality, efficient healthcare, better treatment and quality of life by analyzing biomedical and healthcare data including patient’s data, electronic health records (EHRs) and lifestyle. Previously, it was a common requirement to have a domain expert to develop a model for biomedical or healthcare; however, recent advancements in representation learning algorithms allows us to automatically to develop the model. Biomedical image mining, a novel research area, due to the vast amount of available biomedical images, increasingly generates and stores digitally. These images are mainly in the form of computed tomography (CT), X-ray, nuclear medicine imaging (PET, SPECT), magnetic resonance imaging (MRI) and ultrasound. Patients’ biomedical images can be digitized using data mining techniques and may help in answering several important and critical questions relating to healthcare. Image mining in medicine can help to uncover new relationships between data and reveal new useful information that can be helpful for doctors in treating their patients. Audience Researchers in various fields including computer science, medical informatics, healthcare IOT, artificial intelligence, machine learning, image processing, clinical big data analytics.

Download or read book Deep Learning in Medical Image Analysis written by R. Indrakumari and published by . This book was released on 2024 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The proposed book is designed as a reference text and provides a comprehensive overview of conceptual and practical knowledge about deep learning in medical image processing techniques. The post-pandemic situation teaches us the importance of doctors, medical analysis, and diagnosis of diseases in a rapid manner. This book provides a snapshot of the state of current research between deep learning, medical image processing, and healthcare with special emphasis on saving human life. The chapters cover a range of advanced technologies related to patient health monitoring, predicting diseases from genomic data, detecting artefactual events in vital signs monitoring data, and managing chronic diseases. Features Delivers an ideal introduction to image processing in medicine, emphasizing the clinical relevance and special requirements of the field. Presents key principles by implementing algorithms from scratch and using simple MATLAB/Octave scripts with image data. Provides an overview of the physics of medical image processing alongside discussing image formats and data storage, intensity transforms, filtering of images and applications of the fourier transform, three-dimensional spatial transforms, volume rendering, image registration, and tomographic reconstruction. Highlights the new potential applications of machine learning techniques to the solution of important problems in biomedical image applications. The book is for students, scholars and professionals of biomedical technology and healthcare data analytics"--

Download or read book Handbook of Research on Disease Prediction Through Data Analytics and Machine Learning written by Rani, Geeta and published by IGI Global. This book was released on 2020-10-16 with total page 586 pages. Available in PDF, EPUB and Kindle. Book excerpt: By applying data analytics techniques and machine learning algorithms to predict disease, medical practitioners can more accurately diagnose and treat patients. However, researchers face problems in identifying suitable algorithms for pre-processing, transformations, and the integration of clinical data in a single module, as well as seeking different ways to build and evaluate models. The Handbook of Research on Disease Prediction Through Data Analytics and Machine Learning is a pivotal reference source that explores the application of algorithms to making disease predictions through the identification of symptoms and information retrieval from images such as MRIs, ECGs, EEGs, etc. Highlighting a wide range of topics including clinical decision support systems, biomedical image analysis, and prediction models, this book is ideally designed for clinicians, physicians, programmers, computer engineers, IT specialists, data analysts, hospital administrators, researchers, academicians, and graduate and post-graduate students.

Download or read book Deep Learning Models for Medical Imaging written by KC Santosh and published by Academic Press. This book was released on 2021-09-07 with total page 172 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep Learning Models for Medical Imaging explains the concepts of Deep Learning (DL) and its importance in medical imaging and/or healthcare using two different case studies: a) cytology image analysis and b) coronavirus (COVID-19) prediction, screening, and decision-making, using publicly available datasets in their respective experiments. Of many DL models, custom Convolutional Neural Network (CNN), ResNet, InceptionNet and DenseNet are used. The results follow ‘with’ and ‘without’ transfer learning (including different optimization solutions), in addition to the use of data augmentation and ensemble networks. DL models for medical imaging are suitable for a wide range of readers starting from early career research scholars, professors/scientists to industrialists. Provides a step-by-step approach to develop deep learning models Presents case studies showing end-to-end implementation (source codes: available upon request)

Download or read book Artificial Intelligence and Computational Dynamics for Biomedical Research written by Ankur Saxena and published by Walter de Gruyter GmbH & Co KG. This book was released on 2022-11-07 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work presents the latest development in the field of computational intelligence to advance Big Data and Cloud Computing concerning applications in medical diagnosis. As forum for academia and professionals it covers state-of-the-art research challenges and issues in the digital information & knowledge management and the concerns along with the solutions adopted in these fields.

Download or read book Translational Bioinformatics Applications in Healthcare written by Khalid Raza and published by CRC Press. This book was released on 2021-04-19 with total page 225 pages. Available in PDF, EPUB and Kindle. Book excerpt: Translational bioinformatics (TBI) involves development of storage, analytics, and advanced computational methods to harvest knowledge from voluminous biomedical and genomic data into 4P healthcare (proactive, predictive, preventive, and participatory). Translational Bioinformatics Applications in Healthcare offers a detailed overview on concepts of TBI, biological and clinical databases, clinical informatics, and pertinent real-case applications. It further illustrates recent advancements, tools, techniques, and applications of TBI in healthcare, including Internet of Things (IoT) potential, toxin databases, medical image analysis and telemedicine applications, analytics of COVID-19 CT images, viroinformatics and viral diseases, and COVID-19–related research. Covers recent technologies such as Blockchain, IoT, and Big data analytics in bioinformatics Presents the role of translational bioinformatic methods in the field of viroinformatics, as well as in drug development and repurposing Includes translational healthcare and NGS for clinical applications Illustrates translational medicine systems and their applications in better healthcare Explores medical image analysis with focus on CT images and novel coronavirus disease detection Aimed at researchers and graduate students in computational biology, data mining and knowledge discovery, algorithms and complexity, and interdisciplinary fields of studies, including bioinformatics, health-informatics, biostatistics, biomedical engineering, and viroinformatics. Khalid Raza is an Assistant Professor, the Department of Computer Science, Jamia Millia Islamia (Central University), New Delhi. His research interests include translational bioinformatics, computational intelligence methods and its applications in bioinformatics, viroinformatics, and health informatics. Nilanjan Dey is an Associate Professor, the Department of Computer Science and Engineering, JIS University, Kolkata, India. His research interests include medical imaging, machine learning, computer-aided diagnosis, and data mining.

Download or read book Deep Learning in Healthcare written by Yen-Wei Chen and published by Springer Nature. This book was released on 2019-11-18 with total page 225 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive overview of deep learning (DL) in medical and healthcare applications, including the fundamentals and current advances in medical image analysis, state-of-the-art DL methods for medical image analysis and real-world, deep learning-based clinical computer-aided diagnosis systems. Deep learning (DL) is one of the key techniques of artificial intelligence (AI) and today plays an important role in numerous academic and industrial areas. DL involves using a neural network with many layers (deep structure) between input and output, and its main advantage of is that it can automatically learn data-driven, highly representative and hierarchical features and perform feature extraction and classification on one network. DL can be used to model or simulate an intelligent system or process using annotated training data. Recently, DL has become widely used in medical applications, such as anatomic modelling, tumour detection, disease classification, computer-aided diagnosis and surgical planning. This book is intended for computer science and engineering students and researchers, medical professionals and anyone interested using DL techniques.