Download or read book Data driven Modelling of Structured Populations written by Stephen P. Ellner and published by Springer. This book was released on 2016-05-13 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a “How To” guide for modeling population dynamics using Integral Projection Models (IPM) starting from observational data. It is written by a leading research team in this area and includes code in the R language (in the text and online) to carry out all computations. The intended audience are ecologists, evolutionary biologists, and mathematical biologists interested in developing data-driven models for animal and plant populations. IPMs may seem hard as they involve integrals. The aim of this book is to demystify IPMs, so they become the model of choice for populations structured by size or other continuously varying traits. The book uses real examples of increasing complexity to show how the life-cycle of the study organism naturally leads to the appropriate statistical analysis, which leads directly to the IPM itself. A wide range of model types and analyses are presented, including model construction, computational methods, and the underlying theory, with the more technical material in Boxes and Appendices. Self-contained R code which replicates all of the figures and calculations within the text is available to readers on GitHub. Stephen P. Ellner is Horace White Professor of Ecology and Evolutionary Biology at Cornell University, USA; Dylan Z. Childs is Lecturer and NERC Postdoctoral Fellow in the Department of Animal and Plant Sciences at The University of Sheffield, UK; Mark Rees is Professor in the Department of Animal and Plant Sciences at The University of Sheffield, UK.

Download or read book Discrete Time Dynamics of Structured Populations and Homogeneous Order Preserving Operators written by Horst R. Thieme and published by American Mathematical Society. This book was released on 2024-05-07 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: A fundamental question in the theory of discrete and continuous-time population models concerns the conditions for the extinction or persistence of populations – a question that is addressed mathematically by persistence theory. For some time, it has been recognized that if the dynamics of a structured population are mathematically captured by continuous or discrete semiflows and if these semiflows have first-order approximations, the spectral radii of certain bounded linear positive operators (better known as basic reproduction numbers) act as thresholds between population extinction and persistence. This book combines the theory of discrete-time dynamical systems with applications to population dynamics with an emphasis on spatial structure. The inclusion of two sexes that must mate to produce offspring leads to the study of operators that are (positively) homogeneous (of degree one) and order-preserving rather than linear and positive. While this book offers an introduction to ordered normed vector spaces, some background in real and functional analysis (including some measure theory for a few chapters) will be helpful. The appendix and selected exercises provide a primer about basic concepts and about relevant topics one may not find in every analysis textbook.

Download or read book Integrated Population Models written by Michael Schaub and published by Academic Press. This book was released on 2021-11-12 with total page 640 pages. Available in PDF, EPUB and Kindle. Book excerpt: Integrated Population Models: Theory and Ecological Applications with R and JAGS is the first book on integrated population models, which constitute a powerful framework for combining multiple data sets from the population and the individual levels to estimate demographic parameters, and population size and trends. These models identify drivers of population dynamics and forecast the composition and trajectory of a population. Written by two population ecologists with expertise on integrated population modeling, this book provides a comprehensive synthesis of the relevant theory of integrated population models with an extensive overview of practical applications, using Bayesian methods by means of case studies. The book contains fully-documented, complete code for fitting all models in the free software, R and JAGS. It also includes all required code for pre- and post-model-fitting analysis. Integrated Population Models is an invaluable reference for researchers and practitioners involved in population analysis, and for graduate-level students in ecology, conservation biology, wildlife management, and related fields. The text is ideal for self-study and advanced graduate-level courses. Offers practical and accessible ecological applications of IPMs (integrated population models) Provides full documentation of analyzed code in the Bayesian framework Written and structured for an easy approach to the subject, especially for non-statisticians

Download or read book Theoretical Ecology written by Kevin S. McCann and published by Oxford University Press, USA. This book was released on 2020-04-29 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: Theoretical Ecology: concepts and applications continues the authoritative and established sequence of theoretical ecology books initiated by Robert M. May which helped pave the way for ecology to become a more robust theoretical science, encouraging the modern biologist to better understand the mathematics behind their theories. This latest instalment builds on the legacy of its predecessors with a completely new set of contributions. Rather than placing emphasis on the historical ideas in theoretical ecology, the Editors have encouraged each contribution to: synthesize historical theoretical ideas within modern frameworks that have emerged in the last 10-20 years (e.g. bridging population interactions to whole food webs); describe novel theory that has emerged in the last 20 years from historical empirical areas (e.g. macro-ecology); and finally to cover the rapidly expanding area of theoretical ecological applications (e.g. disease theory and global change theory). The result is a forward-looking synthesis that will help guide the field through a further decade of discovery and development. It is written for upper level undergraduate students, graduate students, and researchers seeking synthesis and the state of the art in growing areas of interest in theoretical ecology, genetics, evolutionary ecology, and mathematical biology.

Download or read book Demographic Methods across the Tree of Life written by Roberto Salguero-Gomez and published by Oxford University Press. This book was released on 2021-08-31 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: Demography is everywhere in our lives: from birth to death. Indeed, the universal currencies of survival, development, reproduction, and recruitment shape the performance of all species, from microbes to humans. The number of techniques for demographic data acquisition and analyses across the entire tree of life (microbes, fungi, plants, and animals) has drastically increased in recent decades. These developments have been partially facilitated by the advent of technologies such as GIS and drones, as well as analytical methods including Bayesian statistics and high-throughput molecular analyses. However, despite the universality of demography and the significant research potential that could emerge from unifying: (i) questions across taxa, (ii) data collection protocols, and (iii) analytical tools, demographic methods to date have remained taxonomically siloed and methodologically disintegrated. This is the first book to attempt a truly unified approach to demography and population ecology in order to address a wide range of questions in ecology, evolution, and conservation biology across the entire spectrum of life. This novel book provides the reader with the fundamentals of data collection, model construction, analyses, and interpretation across a wide repertoire of demographic techniques and protocols. It introduces the novice demographer to a broad range of demographic methods, including abundance-based models, life tables, matrix population models, integral projection models, integrated population models, individual based models, and more. Through the careful integration of data collection methods, analytical approaches, and applications, clearly guided throughout with fully reproducible R scripts, the book provides an up-to-date and authoritative overview of the most popular and effective demographic tools. Demographic Methods across the Tree of Life is aimed at graduate students and professional researchers in the fields of demography, ecology, animal behaviour, genetics, evolutionary biology, mathematical biology, and wildlife management.

Download or read book Stage Structured Populations written by Bryan Manly and published by Springer Science & Business Media. This book was released on 2013-03-09 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a review of methods for obtaining and analysing data from stage-structured biological populations. The topics covered are sam pling designs (Chapter 2), the estimation of parameters by maximum likelihood (Chapter 3), the analysis of sample counts of the numbers cif individuals in different stages at different times (Chapters 4 and 5), the analysis of data using Leslie matrix types of model (Chapter 6) and key factor analysis (Chapter 7). There is also some discussion of the approaches to modelling and estimation that have been used in five studies of particular populations (Chapter 8). There is a large literature on the modelling of biological populations, and a multitude of different approaches have been used in this area. The various approaches can be classified in different ways (Southwood, 1978, ch. 12), but for the purposes of this book it is convenient to think of the three categories mathematical, statistical and predictive modelling. Mathematical modelling is concerned largely with developing models that capture the most important qualitative features of population dynamics. In this case, the models that are developed do not have to be compared with data from natural populations. As representations of idealized systems, they can be quite informative in showing the effects of changing parameters, indicating what factors are most important in promoting stability, and so on.

Download or read book Advances in Discrete Dynamical Systems Difference Equations and Applications written by Saber Elaydi and published by Springer Nature. This book was released on 2023-03-25 with total page 534 pages. Available in PDF, EPUB and Kindle. Book excerpt: ​This book comprises selected papers of the 26th International Conference on Difference Equations and Applications, ICDEA 2021, held virtually at the University of Sarajevo, Bosnia and Herzegovina, in July 2021. The book includes the latest and significant research and achievements in difference equations, discrete dynamical systems, and their applications in various scientific disciplines. The book is interesting for Ph.D. students and researchers who want to keep up to date with the latest research, developments, and achievements in difference equations, discrete dynamical systems, and their applications, the real-world problems.

Download or read book Advances in data driven approaches and modeling of complex systems written by Mohd Hafiz Mohd and published by Frontiers Media SA. This book was released on 2023-06-27 with total page 133 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Unsolved Problems in Ecology written by Andrew Dobson and published by Princeton University Press. This book was released on 2020-06-02 with total page 412 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This volume provides a series of essays on open questions in ecology with the overarching goal being to outline to the most important, most interesting or most fundamental problems in ecology that need to be addressed. The contributions span ecological subfields, from behavioral ecology and population ecology to disease ecology and conservation and range in tone from the technical to more personal meditations on the state of the field. Many of the chapters start or end in moments of genuine curiosity, like one which takes up the question of why the world is green or another which asks what might come of a thought experiment in which we "turn-off" evolution entirely"--

Download or read book Automating Data Driven Modelling of Dynamical Systems written by Dhruv Khandelwal and published by Springer Nature. This book was released on 2022-02-03 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes a user-friendly, evolutionary algorithms-based framework for estimating data-driven models for a wide class of dynamical systems, including linear and nonlinear ones. The methodology addresses the problem of automating the process of estimating data-driven models from a user’s perspective. By combining elementary building blocks, it learns the dynamic relations governing the system from data, giving model estimates with various trade-offs, e.g. between complexity and accuracy. The evaluation of the method on a set of academic, benchmark and real-word problems is reported in detail. Overall, the book offers a state-of-the-art review on the problem of nonlinear model estimation and automated model selection for dynamical systems, reporting on a significant scientific advance that will pave the way to increasing automation in system identification.

Download or read book Integrodifference Equations in Spatial Ecology written by Frithjof Lutscher and published by Springer Nature. This book was released on 2019-10-30 with total page 385 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first thorough introduction to and comprehensive treatment of the theory and applications of integrodifference equations in spatial ecology. Integrodifference equations are discrete-time continuous-space dynamical systems describing the spatio-temporal dynamics of one or more populations. The book contains step-by-step model construction, explicitly solvable models, abstract theory and numerical recipes for integrodifference equations. The theory in the book is motivated and illustrated by many examples from conservation biology, biological invasions, pattern formation and other areas. In this way, the book conveys the more general message that bringing mathematical approaches and ecological questions together can generate novel insights into applications and fruitful challenges that spur future theoretical developments. The book is suitable for graduate students and experienced researchers in mathematical ecology alike.

Download or read book Data Science in Engineering Volume 10 written by Ramin Madarshahian and published by Springer Nature. This book was released on 2023-12-07 with total page 185 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data Science in Engineering, Volume 10: Proceedings of the 41st IMAC, A Conference and Exposition on Structural Dynamics, 2023, the tenth volume of ten from the Conference brings together contributions to this important area of research and engineering. The collection presents early findings and case studies on fundamental and applied aspects of Data Science in Engineering, including papers on: Novel Data-driven Analysis Methods Deep Learning Gaussian Process Analysis Real-time Video-based Analysis Applications to Nonlinear Dynamics and Damage Detection High-rate Structural Monitoring and Prognostics

Download or read book Statistical Modeling for Naturalists written by Pedro F. Quintana Ascencio and published by Cambridge Scholars Publishing. This book was released on 2022-01-31 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book will allow naturalists, nature stewards, and graduate students to appreciate and comprehend basic statistical concepts as a bridge to more complex themes relevant to their daily work. Although there are excellent sources on more specialized analytical topics relevant to naturalists, this introductory book makes a connection with the experience and needs of field practitioners. It uses aspects of the natural history of the Florida scrub relevant for conservation and management as examples of analytical issues pertinent to the naturalist in a broader context. Each chapter identifies important ecological questions and then provides approaches to evaluate data, focusing on the analytical decision-making process. The book guides the reader on frequently overlooked aspects such as the understanding of model assumptions, alternative model specifications, model output interpretation, and model limitations.

Download or read book Population Dynamics for Conservation written by Louis W. Botsford and published by Oxford University Press, USA. This book was released on 2019-10 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book outlines concepts such as population variability, population stability, population viability and persistance, and harvest yield. Also addressed are specific applications to conservation such as managing species at risk, fishery management, and the spatial manageement of marine resources.--Adapted from back cover.

Download or read book Plant Strategies written by Daniel C. Laughlin and published by Oxford University Press. This book was released on 2023-07-27 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: How do plants make a living? Some plants are gamblers, others are swindlers. Some plants are habitual spenders while others are strugglers and miserly savers. Plants have evolved a spectacular array of solutions to the existential problems of survival and reproduction in a world where resources are scarce, disturbances can be deadly, and competition is cut-throat. Few topics have both captured the imagination and furrowed the brows of plant ecologists, yet no topic is more important for understanding the assembly of plant communities, predicting plant responses to global change, and enhancing the restoration of our rapidly degrading biosphere. The vast array of plant strategy models that characterize the discipline now require synthesis. These models tend to emphasize either life history strategies based on demography, or functional strategies based on ecophysiology. Indeed, this disciplinary divide between demography and physiology runs deep and continues to this today. The goal of this accessible book is to articulate a coherent framework that unifies life history theory with comparative functional ecology to advance prediction in plant ecology. Armed with a deeper understanding of the dimensionality of life history and functional traits, we are now equipped to quantitively link phenotypes to population growth rates across gradients of resource availability and disturbance regimes. Predicting how species respond to global change is perhaps the most important challenge of our time. A robust framework for plant strategy theory will advance this research agenda by testing the generality of traits for predicting population dynamics.

Download or read book Structured Population Models in Marine Terrestrial and Freshwater Systems written by Shripad Tuljapurkar and published by Springer Science & Business Media. This book was released on 1997-01-31 with total page 660 pages. Available in PDF, EPUB and Kindle. Book excerpt: Providing many examples of how models can be implemented and interpreted, this book describes the biology of the life cycle and follows the transitions of individuals through stages in the life cycle. The focus is on models as tools.

Download or read book Sensitivity Analysis Matrix Methods in Demography and Ecology written by Hal Caswell and published by Springer. This book was released on 2019-04-02 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book shows how to use sensitivity analysis in demography. It presents new methods for individuals, cohorts, and populations, with applications to humans, other animals, and plants. The analyses are based on matrix formulations of age-classified, stage-classified, and multistate population models. Methods are presented for linear and nonlinear, deterministic and stochastic, and time-invariant and time-varying cases. Readers will discover results on the sensitivity of statistics of longevity, life disparity, occupancy times, the net reproductive rate, and statistics of Markov chain models in demography. They will also see applications of sensitivity analysis to population growth rates, stable population structures, reproductive value, equilibria under immigration and nonlinearity, and population cycles. Individual stochasticity is a theme throughout, with a focus that goes beyond expected values to include variances in demographic outcomes. The calculations are easily and accurately implemented in matrix-oriented programming languages such as Matlab or R. Sensitivity analysis will help readers create models to predict the effect of future changes, to evaluate policy effects, and to identify possible evolutionary responses to the environment. Complete with many examples of the application, the book will be of interest to researchers and graduate students in human demography and population biology. The material will also appeal to those in mathematical biology and applied mathematics.