Download or read book Cheminformatics Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2022-04-01 with total page 554 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and tutorial examples written by the author while he was learning cheminformatics and related tools. Topics include SMILES (Simplified Molecular-Input Line-Entry System) specifications; Open Babel chemical toolbox for file format conversion; Fingerprint index files used by Open Babel for fast search; RDKit for cheminformatics and machine learning; Substructure search and decomposition with RDKit; RDKit performance on large molecule datasets; molecular fingerprints generation methods; AlphaFold as an AI system to predict protein’s 3D structure. Updated in 2024 (Version v2.03) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Cheminformatics.
Download or read book C Tutorials Herong s Tutorial Examples written by Dr. Herong Yang and published by HerongYang.com. This book was released on 2020-12-20 with total page 159 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning C#. Topics include: Data, Variables and Expressions; Logical Expressions and Conditional Statements; Arrays and Loops; Data Types; Precision of "float", "double", and "decimal"; Performance of "float", "double", and "decimal"; Binary Representation of "float" and "double" Values; Binary Representation of "decimal" Values - Methods; Execution Environment; Common Language Runtime; Intermediate Language Assembler and Disassembler; Private Memory vs. Virtual Memory; Multithreading programs; Async and Await Feature; WPF (Windows Presentation Foundation); MSBuild tool; XAML (eXtensible Application Markup Language). Updated in 2020 (Version 3.31) with minor changes. For latest updates and free sample chapters, visit http://www.herongyang.com/C-Sharp.
Download or read book HTML Tutorials Herong s Tutorial Examples written by Dr. Herong Yang and published by Herong Yang. This book was released on 2021-05-01 with total page 143 pages. Available in PDF, EPUB and Kindle. Book excerpt: This tutorial book is a collection of notes and sample codes written by the author while he was learning HTML himself. Topics include HTML5 and HTML 4.01 standards; HTML document structure; HTML element and attribute syntax; embedding SVG to generate graphics; embedding JavaScript code; adding (CSS Cascading Style Sheets) for display format; displayed and printed versions of HTML documents; responsive design of Web pages; MathML integration in HTML documents. Updated in 2023 (Version v2.30) on MathML tutorials. For latest updates and free sample chapters, visit https://www.herongyang.com/HTML.
Download or read book Android Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2021-05-01 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning Android system. Topics include Installing of Android SDK on Windows, Creating and running Android emulators, Developing First Android Application - HelloAndroid, Creating Android Project with 'android' Command, Building, Installing and Running the Debug Binary Package, Inspecting Android Application Package (APK) Files, Using Android Debug Bridge (adb) Tool, Copying files from and to Android device, Understanding Android File Systems, Using Android Java class libraries, Using 'adb logcat' Command for Debugging. Updated in 2023 (Version v3.05) with ADB tutorials. For latest updates and free sample chapters, visit https://www.herongyang.com/Android.
Download or read book Neural Network Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2021-03-06 with total page 177 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning Neural Networks in Machine Learning. Topics include Neural Networks (NN) concepts: nodes, layers, activation functions, learning rates, training sets, etc.; deep playground for classical neural networks; building neural networks with Python; walking through Tariq Rashi's 'Make Your Own Neural Network' source code; using 'TensorFlow' and 'PyTorch' machine learning platforms; understanding CNN (Convolutional Neural Network), RNN (Recurrent Neural Network), GNN (Graph Neural Network). Updated in 2023 (Version v1.22) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Neural-Network.
Download or read book JVM Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2020-10-10 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning JVM himself. Topics include JVM (Java Virtual Machine) Architecture and Components; Oracle JVM implementation - HotSpot; Eclipse JVM implementation - Eclipse OpenJ9; java.lang.Runtime - The JVM Instance class; Loading Native Libraries; java.lang.System - Representing Operating System; java.lang.ClassLoader - Loading class files; java.lang.Class - Class reflections; Runtime data areas, heap memory and Garbage Collection; Stack, Frame and Stack overflow; Multi-threading impacts on CPU and I/O; CDS (Class Data Sharing); Micro Benchmark tests on different types of operations. Updated in 2024 (Version v5.13) with HotSpot JVM 20. For latest updates and free sample chapters, visit https://www.herongyang.com/JVM.
Download or read book Cryptography Tutorials Herong s Tutorial Examples written by Herong Yang and published by Lulu.com. This book was released on 2019-02-15 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This cryptography tutorial book is a collection of notes and sample codes written by the author while he was learning cryptography technologies himself. Topics include MD5 and SHA1 message digest algorithms and implementations, DES, Blowfish and AES secret key cipher algorithms and implementations, RSA and DSA public key encription algorithms and implementations, Java and PHP cryptography APIs, OpenSSL, keytool and other cryptography tools, PKI certificates and Web browser supports.Updated in 2019 (Version Version 5.40) with Java 12. For latest updates and free sample chapters, visit http://www.herongyang.com/Cryptography.
Download or read book JSP Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2006-01-01 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning JSP (JavaServer Pages). Topics include Tomcat installation and configuration to support JSP; JSP execution context, JSP elements, and sessions; Using JavaBean Classes; Cookie management; Controlling HTTP Response Header Lines; Supporting non-ASCII characters and localization; Debugging and measuring performance; Using EL (Expression Language); JSTL (JSP Standard Tag Library) syntax and Tag Java interface; Managing file uploads. Updated in 2022 (Version v5.11) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/JSP.
Download or read book Blowfish Cipher Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2020-12-20 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: This tutorial book is a collection of notes and sample codes written by the author while he was learning Blowfish cipher himself. Topics basic concepts of cipher and encryption; introduction of Blowfish cipher algorithm; 8366 Hex Digits of PI; Perl Crypt::Blowfish and Crypt::CBC, Crypt::CFB modules; OpenSSL Blowfish ciphers: bf-ecb, bf-cbc, bf-cfb, bf-ofb; PHP Mcrypt extension; Blowfish CFB-8 and OFB-8 operation modes. Updated in 2024 (Version v2.04) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/Blowfish.
Download or read book Java Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2020-10-10 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: This tutorial book is a collection of notes and sample codes written by the author while he was learning Java himself. Topics covered in the book include: Java language basics; execution environment; generic classes and parameterized type; generic methods and type argument inferences; enum types and constants; lambda expressions; annotation types and invocations; Java modules; execution threads and synchronization; memory management and garbage collection. Updated in 2024 (Version v8.22) with JDK 20. For latest updates and free sample chapters, visit https://www.herongyang.com/Java.
Download or read book PHP Tutorials Herong s Tutorial Examples written by Herong Yang and published by Lulu.com. This book was released on 2019-02-09 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: This PHP tutorial book is a collection of notes and sample codes written by the author while he was learning PHP himself. It can be used as a tutorial guide for beginners or a reference book for experienced developers. Topics include PHP script file syntax; data types and iterals; variables, operations and expressions; flow control statements: 'if' and 'switch'; loop statements: 'while', 'for', and 'do ... while'; function declaration, arguments, and return values; array and ordered maps; sending out emails; integrating with HTTP Web servers; accessing HTTP requests and responses; managing sessions and cookies; controlling HTTP response headers; accessing MySQL database server; accessing files and directories; using SOAP extension; managing non-ASCII characters; using classes and objects. For latest update, visit http://www.herongyang.com/PHP.
Download or read book EC Cryptography Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2019-03-03 with total page 243 pages. Available in PDF, EPUB and Kindle. Book excerpt: This EC (Elliptic Curve) cryptography tutorial book is a collection of notes and sample codes written by the author while he was learning cryptography technologies himself. Topics include rule of chord and point addition on elliptic curves; Abelian groups with additive/multiplicative notations; EC as Abelian groups; DLP (Discrete Logarithm Problem) and trapdoor function; Galois fields or finite fields with Additive/Multiplicative Abelian Group; Prime fields, binary fields, and polynomial fields; EC fields reduced with modular arithmetic; EC subgroup and base points; EC private key and public key pairs; ECDH (Elliptic Curve Diffie-Hellman) protocol; ECDSA (Elliptic Curve Digital Signature Algorithm); ECES (Elliptic Curve Encryption Scheme) protocol; Java tool/program to generate EC keys. Updated in 2022 (Version v1.02) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/EC-Cryptography.
Download or read book Python Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2011-04-01 with total page 415 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Python tutorial book is a collection of notes and sample codes written by the author while he was learning Python language himself. Topics include: installing Python environments on Windows, macOS and Linux computer; Python built-in data types; variables, operations, expressions and statements; user-defined functions; iterators, generators and list/set/dictionary comprehensions; modules and packages; sys, os, and pathlib modules; Anaconda Python environment manager; Jupyter Notebooks; NumPy, SciPy libraries. Updated in 2024 (Version v2.15) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/Python.
Download or read book XML Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2019-01-01 with total page 293 pages. Available in PDF, EPUB and Kindle. Book excerpt: This XML tutorial book is a collection of notes and sample codes written by the author while he was learning XML himself. Topics include introduction to XML, DTD (Document Type Definition), XSD (XML Schema Definition), XPath (XML Path Language), XSL (Extensible Stylesheet Language), XSLT (XSL Transformation), XSL-FO (Formatting Objects), DOM (Document Object Model), and SAX (Simple API for XML); viewing XML with Chrome, Firefox, Safari and IE Web browsers; XML tools with Notepad++ and Atom editors; generating and parsing XML with Java, PHP and Python programs; converting XML to and from JSON. Updated in 2024 (Version v5.25) with minor changes. For latest updates and free sample chapters, visit https://www.herongyang.com/XML.
Download or read book Linux Apps Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on with total page 177 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and sample codes written by the author while he was learning Linux applications. Topics include using managing users and groups; managing files and directories; managing Apache Web server and SquirrelMail; managing MySQL server; developing Python and PHP scripts; using GCC C/C++ compilers; running graphical applications on GNOME desktop and X11 servers; running Conda - Environment and Package Manager. Updated in 2023 (Version v1.02) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Linux-Apps.
Download or read book JDK Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2022-01-15 with total page 490 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of tutorial notes and sample codes written by the author while he was learning JDK (Java Development Kit) core libraries himself. Topics include Time and Calendar, Internationalization, Unnamed Packages, Collections, Character Set and Encoding, Logging, XML related technologies: DOM, SAX, DTD, XSD, and XSL, Cryptography, Certificates, Key stores, Cipher and Encryption, Socket communication, SSL and HTTPS. Updated in 2024 (Version v6.32) with JDK 20. For latest updates and free sample chapters, visit https://www.herongyang.com/JDK.
Download or read book Molecule Tutorials Herong s Tutorial Examples written by Herong Yang and published by HerongYang.com. This book was released on 2021-05-01 with total page 495 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a collection of notes and tutorial examples written by the author while he was learning molecules and related tools. Topics include understanding atoms, bonds and molecules; introduction of atomic isotopes and elements; introduction of proteins and amino acids; introduction of protein kinases; molecule SDF (Structure Data File) format; generating PNG pictures from molecule SDF files; installing RDkit as molecule tool; visualizing molecule structure in 3-D with PyMol; generating molecule movie with PyMol. Updated in 2023 (Version v1.26) with minor updates. For latest updates and free sample chapters, visit https://www.herongyang.com/Molecule.
