Download or read book Bridging the Genomics Gap written by Billie-Jo Hardy and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Systems for Research and Evaluation for Translating Genome Based Discoveries for Health written by Institute of Medicine and published by National Academies Press. This book was released on 2009-11-10 with total page 103 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the advent of genome-wide association studies, numerous associations between specific gene loci and complex diseases have been identified-for breast cancer, coronary artery disease, and asthma, for example. This rapidly advancing field of genomics has stirred great interest in "personalized" health care from both the public and private sectors. The hope is that using genomic information in clinical care will lead to reduced health care costs and improved health outcomes as therapies are tailored to the genetic susceptibilities of patients. A variety of genetically based health care innovations have already reached the marketplace, but information about the clinical use of these treatments and diagnostics is limited. Currently data do not provide information about how a genomic test impacts clinical care and patient health outcomes-other approaches are needed to garner such information. This volume summarizes a workshop to address central questions related to the development of systems to evaluate clinical use of health care innovations that stem from genome-based research: What are the practical realities of creating such systems? What different models could be used? What are the strengths and weaknesses of each model? How effectively can such systems address questions about health outcomes?

Download or read book Closing the Gap Between Genome Analysis and the Biologist written by Vincenzo Forgetta and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: "Bioinformatics is a crucial component of genomics research because it enables the analyses of large and complex data sets. Conventionally, these analyses involve the use of sophisticated software, and are largely performed by those with prior experience in bioinformatics using adequate computational resources.Massively parallel DNA sequencing (MPS) platforms have democratized genome sequencing, making it affordable to the biologist. For many biologists this will be their first venture into bioinformatics and genomics. Consequently, they may be unfamiliar with bioinformatics or lack the necessary computer resources. For these biologists, the potential of using MPS platforms for genome analysis is half fulfilled; providing affordable genomic data without the means to easily analyze it. One approach to close this gap is to build software oriented towards those with limited bioinformatics expertise or resources.This dissertation describes a paradigm to close the gap between genome analysis and the biologist. Using this paradigm, I have developed software tools for three bioinformatics tasks in genome analysis: [i] assessment of a genome assembly, [ii] display and integrated analysis of genomic data, and [iii] deriving biological insight using public information. The first tool I developed was cgb, a program that creates custom UCSC Genome Browsers, allowing biologists to use this browser for genome sequences obtained from MPS platforms. Using cgb for a comparative genomics study of Clostridium difficile assisted us to identify diagnostic DNA markers associated with disease severity and to estimate that the pan-genome is larger than previously estimated. Next I developed contiGo, a general purpose tool to inspect genome assemblies via a web browser, thus bypassing the need for the biologist to install software, satisfy hardware requirements, and download large datasets. Along with cgb, this program enabled us to evaluate the performance of the Roche/454 Genome Sequencer-FLX MPS platform across five sequencing core facilities, and to produce a high quality genome sequence of the fungus Ophiostoma novo-ulmi. Lastly, I developed BL!P, a program to automate NCBI BLAST searches and explore the results in a dynamic interface. This program was inspired by my work on characterizing the genome of a multi-drug resistant and pathogenic strain of Escherichia fergusonii, for which cgb and contiGo were also used in data analysis. These applications have been used in other genomics projects by users with a range of bioinformatics expertise and resources. Other data-intensive fields of science could benefit from a similar software development paradigm." --

Download or read book Bridging the Gap written by Kristian Giulia Samsom and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book The Rye Genome written by M. Timothy Rabanus-Wallace and published by Springer Nature. This book was released on 2021-10-25 with total page 251 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book celebrates the dawn of the rye genomics era with concise, comprehensive, and accessible reviews on the current state of rye genomic research, written by experts in the field for students, researchers and growers. To most, rye is the key ingredient in a flavoursome bread or their favourite American whisky. To a farmer, rye is the remarkable grain that tolerates the harshest winters and the most unforgiving soils, befitting its legacy as the life-giving seed that fed the ancient civilisations of northern Eurasia. Since the mid-1900s, scientists have employed genetic approaches to better understand and utilize rye, but only since the technological advances of the mid-2010s has the possibility of addressing questions using rye genome assemblies become a reality. Alongside the secret of its unique survival abilities, rye genomics has accelerated research on a host of intriguing topics such as the complex history of rye’s domestication by humans, the nature of genes that switch fertility on and off, the function and origin of accessory chromosomes, and the evolution of selfish DNA.

Download or read book Bridging the Genomic Gaps written by and published by . This book was released on 2018 with total page 113 pages. Available in PDF, EPUB and Kindle. Book excerpt: The advent of next-generation DNA sequencing and the acceleration of computational resources have significantly impacted the speed at which genetic information from microbes and the environments they occupy is obtained and processed. However, these tools have also revealed the limitation of our knowledge base. Sequencing depth and volume are uncovering gene products with little-to-no shared sequence similarity to current collections and databases, thus impeding the ability of homology-based approaches to characterize all sequenced genetic material and downstream analyses describing metabolic capabilities and functional diversity. In silico genome-scale metabolic models are increasingly supplementing genomic and metagenomic studies. These metabolic models enable exploration of the metabolism of an organism within a systems biology perspective. As a reconstruction of the complex metabolic network, models contain information on the genes, enzymes, biochemical reactions, and metabolites of an organism. Metabolic models are typically used with constraint-based linear programming methods to predict cellular phenotypic properties in various growth conditions. Furthermore, metabolic models are reconciled with experimentation to improve the model’s predictive accuracy and to increase our knowledge base of the organism, providing opportunities to use quantitative methods to analyze the bacterial cell. This thesis project aims to exploit genome-scale metabolic models to extend the traditional bioinformatics workflow to provide more accurate descriptions of bacteria, to quantitatively characterize the metabolic landscape of bacteria, and to produce a development environment where systems biology questions are explored and tested. With PMAnalyzer and PyFBA, these computational tools provide the infrastructure to facilitate the aims of this project. PMAnalyzer quickly and automatically calculates bacterial growth properties (e.g, growth rate and yield) from temporal absorbance data measuring cellular accumulation. PyFBA supplies a programmatic environment to explore and use genome-scale metabolic models built from genomic annotations. The use of phenotypic observations and metabolic predictions will provide a new context to discuss genomic-based studies. This project involves studies describing taxonomically-diverse bacteria isolated from the Southern California kelp forest environment.

Download or read book Rewriting Nature written by Paul Enríquez and published by Cambridge University Press. This book was released on 2021-06-24 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rewriting Nature is a cogent, riveting interdisciplinary exploration of the law, science, and policy of emerging genome-editing technology.

Download or read book Mapping and Sequencing the Human Genome written by National Research Council and published by National Academies Press. This book was released on 1988-01-01 with total page 128 pages. Available in PDF, EPUB and Kindle. Book excerpt: There is growing enthusiasm in the scientific community about the prospect of mapping and sequencing the human genome, a monumental project that will have far-reaching consequences for medicine, biology, technology, and other fields. But how will such an effort be organized and funded? How will we develop the new technologies that are needed? What new legal, social, and ethical questions will be raised? Mapping and Sequencing the Human Genome is a blueprint for this proposed project. The authors offer a highly readable explanation of the technical aspects of genetic mapping and sequencing, and they recommend specific interim and long-range research goals, organizational strategies, and funding levels. They also outline some of the legal and social questions that might arise and urge their early consideration by policymakers.

Download or read book Automated DNA Sequencing and Analysis written by Mark D. Adams and published by Elsevier. This book was released on 2012-12-02 with total page 389 pages. Available in PDF, EPUB and Kindle. Book excerpt: A timely book for DNA researchers, Automated DNA Sequencing and Analysis reviews and assesses the state of the art of automated DNA sequence analysis-from the construction of clone libraries to the developmentof laboratory and community databases. It presents the methodologies and strategies of automated DNA sequence analysis in a way that allows them to be compared and contrasted. By taking a broad view of the process of automated sequence analysis, the present volume bridges the gap between the protocols supplied with instrument and reaction kits and the finalized data presented in the research literature. It will be an invaluable aid to both small laboratories that are interested in taking maximum advantageof automated sequence resources and to groups pursuing large-scale cDNA and genomic sequencing projects. - The field of automation in DAN sequencing and analysis is rapidly moving, this book fulfils those needs, reviews the history of the art and provides pointers to future development.

Download or read book UNDERSTANDING DISPARITIES IN ACCESS TO GENOMIC MEDICINE written by and published by . This book was released on 2018 with total page 105 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Genomic medicine is defined as the routine use of genomic information about an individual as part of his or her clinical care as well as the health outcomes and policy implications of that clinical use. It is one approach that has the potential to improve the quality of health care by allowing practitioners to tailor prevention, diagnostic, and treatment strategies to individual patients. In recent years, research breakthroughs, technological advances, and the decreasing cost of DNA sequencing have led to the wider adoption of genomic medicine. However, as with the introduction of new technologies into health care, there are concerns that genetic and genomic testing and services will not reach all segments of the population both now and in the near future, and there remains a gap in knowledge regarding potential health care disparities in genomic medicine and precision health approaches. On June 27, 2018, the National Academies of Sciences, Engineering, and Medicine hosted a public workshop to examine the gaps in knowledge related to access to genomic medicine and to discuss health care disparities and possible approaches to overcoming the disparate use of genomic medicine among populations. Workshop participants discussed research on access to genetics and genomics services in medically underserved areas, model programs of care for diverse patient populations, and current challenges and possible best practices for alleviating health care disparities as they relate to genomics-based approaches. This publication summarizes the presentations and discussions from the workshop"--Publisher's description.

Download or read book Filling the Gaps written by and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Population Genetics for Animal Conservation written by Giorgio Bertorelle and published by Cambridge University Press. This book was released on 2009-05-28 with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt: Illustrates the power and utility of the synergy between population genetics and conservation biology in animal conservation.

Download or read book The Barley Genome written by Nils Stein and published by Springer. This book was released on 2018-08-18 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley’s importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.

Download or read book Physiological Genetics written by John G. Scandalios and published by Academic Press. This book was released on 2014-04-24 with total page 293 pages. Available in PDF, EPUB and Kindle. Book excerpt: Physiological Genetics is a compilation of developments, contributed by experts in the field of physiological genetics. The articles contained in the book covers various accounts of developments in the field. The book starts with an introductory chapter describing genetic factors in developmental gene regulation, followed by discussions on enzyme differentiation, hormonal control of gene expression, biochemical genetics of morphogenesis, cytoplasmic male sterility in maize, plant somatic cell genetics, and the population dynamics of genetic polymorphism. Physiologists, biologists, geneticists, and students will find a valuable reference material.

Download or read book The Amaranth Genome written by Dinesh Adhikary and published by Springer Nature. This book was released on 2021-06-01 with total page 181 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the development of genetic resources in amaranths, with a major focus on genomics, reverse, and forward genetics tools and strategies that have been developed for crop improvement. Amaranth is an ancient crop native to the New World. Interest in amaranths is being renewed, due to their adaptability, stress tolerance, and nutritional value. There are about 65 species in the genus, including Amaranthus caudatus L., A. cruentus L., and A. hypochondriacus L., which are primarily grown as protein-rich grains or pseudocereals. The genus also includes major noxious weeds (e.g., A. palmeri). The amaranths are within the Caryophyllales order and thus many species (e.g., A. tricolor) produce red (betacyanin) or yellow (betaxanthin) betalain pigments, which are chemically distinct from the anthocyanins responsible for red pigmentation in other plants. A. hypochondriacus, which shows disomic inheritance (2n = 32; n= 466 Mb), has been sequenced and annotated with 23,059 protein-coding genes. Additional members of the genus are now also been sequenced including weedy amaranths, other grain amaranths, and their putative progenitors.

Download or read book Conservation and the Genetics of Populations written by Fred W. Allendorf and published by John Wiley & Sons. This book was released on 2009-03-12 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Conservation and the Genetics of Populations gives acomprehensive overview of the essential background, concepts, andtools needed to understand how genetic information can be used todevelop conservation plans for species threatened withextinction. Provides a thorough understanding of the genetic basis ofbiological problems in conservation. Uses a balance of data and theory, and basic and appliedresearch, with examples taken from both the animal and plantkingdoms. An associated website contains example data sets and softwareprograms to illustrate population genetic processes and methods ofdata analysis. Discussion questions and problems are included at the end ofeach chapter to aid understanding. Features Guest Boxes written by leading people in the fieldincluding James F. Crow, Nancy FitzSimmons, Robert C. Lacy, MichaelW. Nachman, Michael E. Soule, Andrea Taylor, Loren H. Rieseberg,R.C. Vrijenhoek, Lisette Waits, Robin S. Waples and AndrewYoung. Supplementary information designed to support Conservationand the Genetics of Populations including: Downloadable sample chapter Answers to questions and problems Data sets illustrating problems from the book Data analysis software programs Website links An Instructor manual CD-ROM for this title is available. Pleasecontact our Higher Education team at ahref="mailto:[email protected]"[email protected]/afor more information.

Download or read book Introduction to Conservation Genetics written by Richard Frankham and published by Cambridge University Press. This book was released on 2010 with total page 643 pages. Available in PDF, EPUB and Kindle. Book excerpt: This impressive author team brings the wealth of advances in conservation genetics into the new edition of this introductory text, including new chapters on population genomics and genetic issues in introduced and invasive species. They continue the strong learning features for students - main points in the margin, chapter summaries, vital support with the mathematics, and further reading - and now guide the reader to software and databases. Many new references reflect the expansion of this field. With examples from mammals, birds ...