Download or read book Biological Data Exploration with Python Pandas and Seaborn written by Martin Jones and published by . This book was released on 2020-06-03 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: In biological research, we''re currently in a golden age of data. It''s never been easier to assemble large datasets to probe biological questions. But these large datasets come with their own problems. How to clean and validate data? How to combine datasets from multiple sources? And how to look for patterns in large, complex datasets and display your findings? The solution to these problems comes in the form of Python''s scientific software stack. The combination of a friendly, expressive language and high quality packages makes a fantastic set of tools for data exploration. But the packages themselves can be hard to get to grips with. It''s difficult to know where to get started, or which sets of tools will be most useful. Learning to use Python effectively for data exploration is a superpower that you can learn. With a basic knowledge of Python, pandas (for data manipulation) and seaborn (for data visualization) you''ll be able to understand complex datasets quickly and mine them for biological insight. You''ll be able to make beautiful, informative charts for posters, papers and presentations, and rapidly update them to reflect new data or test new hypotheses. You''ll be able to quickly make sense of datasets from other projects and publications - millions of rows of data will no longer be a scary prospect! In this book, Dr. Jones draws on years of teaching experience to give you the tools you need to answer your research questions. Starting with the basics, you''ll learn how to use Python, pandas, seaborn and matplotlib effectively using biological examples throughout. Rather than overwhelm you with information, the book concentrates on the tools most useful for biological data. Full color illustrations show hundreds of examples covering dozens of different chart types, with complete code samples that you can tweak and use for your own work. This book will help you get over the most common obstacles when getting started with data exploration in Python. You''ll learn about pandas'' data model; how to deal with errors in input files and how to fit large datasets in memory. The chapters on visualization will show you how to make sophisticated charts with minimal code; how to best use color to make clear charts, and how to deal with visualization problems involving large numbers of data points. Chapters include: Getting data into pandas: series and dataframes, CSV and Excel files, missing data, renaming columns Working with series: descriptive statistics, string methods, indexing and broadcasting Filtering and selecting: boolean masks, selecting in a list, complex conditions, aggregation Plotting distributions: histograms, scatterplots, custom columns, using size and color Special scatter plots: using alpha, hexbin plots, regressions, pairwise plots Conditioning on categories: using color, size and marker, small multiples Categorical axes:strip/swarm plots, box and violin plots, bar plots and line charts Styling figures: aspect, labels, styles and contexts, plotting keywords Working with color: choosing palettes, redundancy, highlighting categories Working with groups: groupby, types of categories, filtering and transforming Binning data: creating categories, quantiles, reindexing Long and wide form: tidying input datasets, making summaries, pivoting data Matrix charts: summary tables, heatmaps, scales and normalization, clustering Complex data files: cleaning data, merging and concatenating, reducing memory FacetGrids: laying out multiple charts, custom charts, multiple heat maps Unexpected behaviours: bugs and missing groups, fixing odd scales High performance pandas: vectorization, timing and sampling Further reading: dates and times, alternative syntax

Download or read book Hands on Data Science for Biologists Using Python written by Yasha Hasija and published by CRC Press. This book was released on 2021-04-08 with total page 299 pages. Available in PDF, EPUB and Kindle. Book excerpt: Hands-on Data Science for Biologists using Python has been conceptualized to address the massive data handling needs of modern-day biologists. With the advent of high throughput technologies and consequent availability of omics data, biological science has become a data-intensive field. This hands-on textbook has been written with the inception of easing data analysis by providing an interactive, problem-based instructional approach in Python programming language. The book starts with an introduction to Python and steadily delves into scrupulous techniques of data handling, preprocessing, and visualization. The book concludes with machine learning algorithms and their applications in biological data science. Each topic has an intuitive explanation of concepts and is accompanied with biological examples. Features of this book: The book contains standard templates for data analysis using Python, suitable for beginners as well as advanced learners. This book shows working implementations of data handling and machine learning algorithms using real-life biological datasets and problems, such as gene expression analysis; disease prediction; image recognition; SNP association with phenotypes and diseases. Considering the importance of visualization for data interpretation, especially in biological systems, there is a dedicated chapter for the ease of data visualization and plotting. Every chapter is designed to be interactive and is accompanied with Jupyter notebook to prompt readers to practice in their local systems. Other avant-garde component of the book is the inclusion of a machine learning project, wherein various machine learning algorithms are applied for the identification of genes associated with age-related disorders. A systematic understanding of data analysis steps has always been an important element for biological research. This book is a readily accessible resource that can be used as a handbook for data analysis, as well as a platter of standard code templates for building models.

Download or read book Managing Your Biological Data with Python written by Allegra Via and published by CRC Press. This book was released on 2014-03-18 with total page 560 pages. Available in PDF, EPUB and Kindle. Book excerpt: Take Control of Your Data and Use Python with ConfidenceRequiring no prior programming experience, Managing Your Biological Data with Python empowers biologists and other life scientists to work with biological data on their own using the Python language. The book teaches them not only how to program but also how to manage their data. It shows how

Download or read book Hands on Data Analysis and Visualization with Pandas written by PURNA CHANDER RAO. KATHULA and published by BPB Publications. This book was released on 2020-08-13 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn how to use JupyterLab, Numpy, pandas, Scipy, Matplotlib, and Seaborn for Data science KEY FEATURESÊÊ _ Get familiar with different inbuilt Data structures, Functional programming, and Datetime objects. _ Handling heavy Datasets to optimize the data types for memory management, reading files in chunks, dask, and modin pandas. _ Time-series analysis to find trends, seasonality, and cyclic components. _ Seaborn to build aesthetic plots with high-level interfaces and customized themes. _ Exploratory data analysis with real-time datasets to maximize the insights about data. DESCRIPTIONÊ The book will start with quick introductions to Python and its ecosystem libraries for data science such as JupyterLab, Numpy, Pandas, SciPy, Matplotlib, and Seaborn. This book will help in learning python data structures and essential concepts such as Functions, Lambdas, List comprehensions, Datetime objects, etc. required for data engineering. It also covers an in-depth understanding of Python data science packages where JupyterLab used as an IDE for writing, documenting, and executing the python code, Numpy used for computation of numerical operations, Pandas for cleaning and reorganizing the data, handling large datasets and merging the dataframes to get meaningful insights. You will go through the statistics to understand the relation between the variables using SciPy and building visualization charts using Matplotllib and Seaborn libraries. WHAT WILL YOU LEARNÊ _ Learn about Python data containers, their methods, and attributes. _ Learn Numpy arrays for the computation of numerical data. _ Learn Pandas data structures, DataFrames, and Series. _ Learn statistics measures of central tendency, central limit theorem, confidence intervals, and hypothesis testing. _ A brief understanding of visualization, control, and draw different inbuilt charts to extract important variables, detect outliers, and anomalies using Matplotlib and Seaborn. Ê WHO THIS BOOK IS FORÊ This book is for anyone who wants to use Python for Data Analysis and Visualization. This book is for novices as well as experienced readers with working knowledge of the pandas library. Basic knowledge of Python is a must.Ê TABLE OF CONTENTSÊ 1. Introduction to Data Analysis 2. Jupyter lab 3. Python overview 4. Introduction to Numpy 5. Introduction to PandasÊ 6. Data Analysis 7. Time-Series Analysis 8. Introduction to Statistics 9. Matplotlib 10. Seaborn 11. Exploratory Data Analysis

Download or read book Introduction to Biological Data Analysis in Python written by Stilianos Louca and published by Stilianos Louca. This book was released on 2023-03-17 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces computational data analysis in biology, using the free and popular programming language python 3. The book targets undergraduate and graduate students in biology with an interest in computational techniques, but could also be of interest to students in other scientific disciplines such as biochemistry, environmental sciences and physics. No prior programming experience is required -- this book is intended for the motivated novice! Readers will learn to load and analyze data and produce professional visualizations. The mathematical content is kept to a bare minimum. Examples and exercises are drawn from a wide spectrum across biology, such as epidemiology, ecology, conservation biology, neuroscience, evolution, genetics, genomics and microbiology. Many exercises use realistic datasets published in the scientific literature, such as bacterial genome sequences, animal GPS tracking data, population time series and biodiversity inventories. References to the scientific literature are provided throughout.

Download or read book Hands On Data Analysis with Pandas written by Stefanie Molin and published by Packt Publishing Ltd. This book was released on 2021-04-29 with total page 788 pages. Available in PDF, EPUB and Kindle. Book excerpt: Get to grips with pandas by working with real datasets and master data discovery, data manipulation, data preparation, and handling data for analytical tasks Key Features Perform efficient data analysis and manipulation tasks using pandas 1.x Apply pandas to different real-world domains with the help of step-by-step examples Make the most of pandas as an effective data exploration tool Book DescriptionExtracting valuable business insights is no longer a ‘nice-to-have’, but an essential skill for anyone who handles data in their enterprise. Hands-On Data Analysis with Pandas is here to help beginners and those who are migrating their skills into data science get up to speed in no time. This book will show you how to analyze your data, get started with machine learning, and work effectively with the Python libraries often used for data science, such as pandas, NumPy, matplotlib, seaborn, and scikit-learn. Using real-world datasets, you will learn how to use the pandas library to perform data wrangling to reshape, clean, and aggregate your data. Then, you will learn how to conduct exploratory data analysis by calculating summary statistics and visualizing the data to find patterns. In the concluding chapters, you will explore some applications of anomaly detection, regression, clustering, and classification using scikit-learn to make predictions based on past data. This updated edition will equip you with the skills you need to use pandas 1.x to efficiently perform various data manipulation tasks, reliably reproduce analyses, and visualize your data for effective decision making – valuable knowledge that can be applied across multiple domains.What you will learn Understand how data analysts and scientists gather and analyze data Perform data analysis and data wrangling using Python Combine, group, and aggregate data from multiple sources Create data visualizations with pandas, matplotlib, and seaborn Apply machine learning algorithms to identify patterns and make predictions Use Python data science libraries to analyze real-world datasets Solve common data representation and analysis problems using pandas Build Python scripts, modules, and packages for reusable analysis code Who this book is for This book is for data science beginners, data analysts, and Python developers who want to explore each stage of data analysis and scientific computing using a wide range of datasets. Data scientists looking to implement pandas in their machine learning workflow will also find plenty of valuable know-how as they progress. You’ll find it easier to follow along with this book if you have a working knowledge of the Python programming language, but a Python crash-course tutorial is provided in the code bundle for anyone who needs a refresher.

Download or read book Pandas for Everyone written by Daniel Y. Chen and published by Addison-Wesley Professional. This book was released on 2022-11-24 with total page 990 pages. Available in PDF, EPUB and Kindle. Book excerpt: Manage and Automate Data Analysis with Pandas in Python Today, analysts must manage data characterized by extraordinary variety, velocity, and volume. Using the open source Pandas library, you can use Python to rapidly automate and perform virtually any data analysis task, no matter how large or complex. Pandas can help you ensure the veracity of your data, visualize it for effective decision-making, and reliably reproduce analyses across multiple data sets. Pandas for Everyone, 2nd Edition, brings together practical knowledge and insight for solving real problems with Pandas, even if you’re new to Python data analysis. Daniel Y. Chen introduces key concepts through simple but practical examples, incrementally building on them to solve more difficult, real-world data science problems such as using regularization to prevent data overfitting, or when to use unsupervised machine learning methods to find the underlying structure in a data set. New features to the second edition include: Extended coverage of plotting and the seaborn data visualization library Expanded examples and resources Updated Python 3.9 code and packages coverage, including statsmodels and scikit-learn libraries Online bonus material on geopandas, Dask, and creating interactive graphics with Altair Chen gives you a jumpstart on using Pandas with a realistic data set and covers combining data sets, handling missing data, and structuring data sets for easier analysis and visualization. He demonstrates powerful data cleaning techniques, from basic string manipulation to applying functions simultaneously across dataframes. Once your data is ready, Chen guides you through fitting models for prediction, clustering, inference, and exploration. He provides tips on performance and scalability and introduces you to the wider Python data analysis ecosystem. Work with DataFrames and Series, and import or export data Create plots with matplotlib, seaborn, and pandas Combine data sets and handle missing data Reshape, tidy, and clean data sets so they’re easier to work with Convert data types and manipulate text strings Apply functions to scale data manipulations Aggregate, transform, and filter large data sets with groupby Leverage Pandas’ advanced date and time capabilities Fit linear models using statsmodels and scikit-learn libraries Use generalized linear modeling to fit models with different response variables Compare multiple models to select the “best” one Regularize to overcome overfitting and improve performance Use clustering in unsupervised machine learning

Download or read book Python for Biologists written by Martin Jones and published by Createspace Independent Publishing Platform. This book was released on 2013 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt: Python for biologists is a complete programming course for beginners that will give you the skills you need to tackle common biological and bioinformatics problems.

Download or read book Hands On Data Analysis with Pandas written by Stefanie Molin and published by Packt Publishing Ltd. This book was released on 2019-07-26 with total page 702 pages. Available in PDF, EPUB and Kindle. Book excerpt: Get to grips with pandas—a versatile and high-performance Python library for data manipulation, analysis, and discovery Key FeaturesPerform efficient data analysis and manipulation tasks using pandasApply pandas to different real-world domains using step-by-step demonstrationsGet accustomed to using pandas as an effective data exploration toolBook Description Data analysis has become a necessary skill in a variety of positions where knowing how to work with data and extract insights can generate significant value. Hands-On Data Analysis with Pandas will show you how to analyze your data, get started with machine learning, and work effectively with Python libraries often used for data science, such as pandas, NumPy, matplotlib, seaborn, and scikit-learn. Using real-world datasets, you will learn how to use the powerful pandas library to perform data wrangling to reshape, clean, and aggregate your data. Then, you will learn how to conduct exploratory data analysis by calculating summary statistics and visualizing the data to find patterns. In the concluding chapters, you will explore some applications of anomaly detection, regression, clustering, and classification, using scikit-learn, to make predictions based on past data. By the end of this book, you will be equipped with the skills you need to use pandas to ensure the veracity of your data, visualize it for effective decision-making, and reliably reproduce analyses across multiple datasets. What you will learnUnderstand how data analysts and scientists gather and analyze dataPerform data analysis and data wrangling in PythonCombine, group, and aggregate data from multiple sourcesCreate data visualizations with pandas, matplotlib, and seabornApply machine learning (ML) algorithms to identify patterns and make predictionsUse Python data science libraries to analyze real-world datasetsUse pandas to solve common data representation and analysis problemsBuild Python scripts, modules, and packages for reusable analysis codeWho this book is for This book is for data analysts, data science beginners, and Python developers who want to explore each stage of data analysis and scientific computing using a wide range of datasets. You will also find this book useful if you are a data scientist who is looking to implement pandas in machine learning. Working knowledge of Python programming language will be beneficial.

Download or read book Hands On Data Analysis with Pandas written by STEFANIE. MOLIN and published by . This book was released on 2019-07-26 with total page 716 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Pandas for Everyone written by Daniel Y. Chen and published by Addison-Wesley Professional. This book was released on 2017-12-15 with total page 1093 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Hands-On, Example-Rich Introduction to Pandas Data Analysis in Python Today, analysts must manage data characterized by extraordinary variety, velocity, and volume. Using the open source Pandas library, you can use Python to rapidly automate and perform virtually any data analysis task, no matter how large or complex. Pandas can help you ensure the veracity of your data, visualize it for effective decision-making, and reliably reproduce analyses across multiple datasets. Pandas for Everyone brings together practical knowledge and insight for solving real problems with Pandas, even if you’re new to Python data analysis. Daniel Y. Chen introduces key concepts through simple but practical examples, incrementally building on them to solve more difficult, real-world problems. Chen gives you a jumpstart on using Pandas with a realistic dataset and covers combining datasets, handling missing data, and structuring datasets for easier analysis and visualization. He demonstrates powerful data cleaning techniques, from basic string manipulation to applying functions simultaneously across dataframes. Once your data is ready, Chen guides you through fitting models for prediction, clustering, inference, and exploration. He provides tips on performance and scalability, and introduces you to the wider Python data analysis ecosystem. Work with DataFrames and Series, and import or export data Create plots with matplotlib, seaborn, and pandas Combine datasets and handle missing data Reshape, tidy, and clean datasets so they’re easier to work with Convert data types and manipulate text strings Apply functions to scale data manipulations Aggregate, transform, and filter large datasets with groupby Leverage Pandas’ advanced date and time capabilities Fit linear models using statsmodels and scikit-learn libraries Use generalized linear modeling to fit models with different response variables Compare multiple models to select the “best” Regularize to overcome overfitting and improve performance Use clustering in unsupervised machine learning

Download or read book Advanced Python for Biologists written by Martin O. Jones and published by Createspace Independent Publishing Platform. This book was released on 2014 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advanced Python for Biologists is a programming course for workers in biology and bioinformatics who want to develop their programming skills. It starts with the basic Python knowledge outlined in Python for Biologists and introduces advanced Python tools and techniques with biological examples. You'll learn: - How to use object-oriented programming to model biological entities - How to write more robust code and programs by using Python's exception system - How to test your code using the unit testing framework - How to transform data using Python's comprehensions - How to write flexible functions and applications using functional programming - How to use Python's iteration framework to extend your own object and functions Advanced Python for Biologists is written with an emphasis on practical problem-solving and uses everyday biological examples throughout. Each section contains exercises along with solutions and detailed discussion.

Download or read book Applied Subsurface Geological Mapping with Structural Methods written by Daniel J. Tearpock and published by Pearson Education. This book was released on 2002-08-16 with total page 1414 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applied Subsurface Geological Mapping, With Structural Methods, 2nd Edition is the practical, up-to-the-minute guide to the use of subsurface interpretation, mapping, and structural techniques in the search for oil and gas resources. Two of the industry's leading consultants present systematic coverage of the field's key principles and newest advances, offering guidance that is valuable for both exploration and development activities, as well as for "detailed" projects in maturely developed areas. Fully updated and expanded, this edition combines extensive information from the published literature with significant material never before published. The authors introduce superior techniques for every major petroleum-related tectonic setting in the world. Coverage includes: A systematic, ten-step philosophy for subsurface interpretation and mapping The latest computer-based contouring concepts and applications Advanced manual and computer-based log correlation Integration of geophysical data into subsurface interpretations and mapping Cross-section construction: structural, stratigraphic, and problem-solving Interpretation and generation of valid fault, structure, and isochore maps New coverage of 3D seismic interpretation, from project setup through documentation Compressional and extensional structures: balancing and interpretation In-depth new coverage of strike-slip faulting and related structures Growth and correlation consistency techniques: expansion indices, Multiple Bischke Plot Analysis, vertical separation versus depth, and more Numerous field examples from around the world Whatever your role in the adventure of finding and developing oil or gas resources–as a geologist, geophysicist, engineer, technologist, manager or investor–the tools presented in this book can make you significantly more effective in your daily technical or decision-oriented activities.

Download or read book Molecules and Radiation written by Jeffrey I. Steinfeld and published by Courier Corporation. This book was released on 2012-11-09 with total page 514 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unified treatment introduces upper-level undergraduates and graduate students to the concepts and methods of modern molecular spectroscopy and their applications to quantum electronics, lasers, and related optical phenomena. Starting with a review of the prerequisite quantum mechanical background, the text examines atomic spectra and diatomic molecules, including the rotation and vibration of diatomic molecules and their electronic spectra. A discussion of rudimentary group theory advances to considerations of the rotational spectra of polyatomic molecules and their vibrational and electronic spectra; molecular beams, masers, and lasers; and a variety of forms of spectroscopy, including optical resonance spectroscopy, coherent transient spectroscopy, multiple-photon spectroscopy, and spectroscopy beyond molecular constants. The text concludes with a series of useful appendixes.

Download or read book Practical Statistics for Data Scientists written by Peter Bruce and published by "O'Reilly Media, Inc.". This book was released on 2017-05-10 with total page 395 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical methods are a key part of of data science, yet very few data scientists have any formal statistics training. Courses and books on basic statistics rarely cover the topic from a data science perspective. This practical guide explains how to apply various statistical methods to data science, tells you how to avoid their misuse, and gives you advice on what's important and what's not. Many data science resources incorporate statistical methods but lack a deeper statistical perspective. If you’re familiar with the R programming language, and have some exposure to statistics, this quick reference bridges the gap in an accessible, readable format. With this book, you’ll learn: Why exploratory data analysis is a key preliminary step in data science How random sampling can reduce bias and yield a higher quality dataset, even with big data How the principles of experimental design yield definitive answers to questions How to use regression to estimate outcomes and detect anomalies Key classification techniques for predicting which categories a record belongs to Statistical machine learning methods that “learn” from data Unsupervised learning methods for extracting meaning from unlabeled data

Download or read book Intelligence Through Simulated Evolution written by Lawrence J. Fogel and published by Wiley-Interscience. This book was released on 1999 with total page 184 pages. Available in PDF, EPUB and Kindle. Book excerpt: A unique, one-stop reference to the history, technology, and application of evolutionary programming Evolutionary programming has come a long way since Lawrence Fogel first proposed in 1961 that intelligence could be modeled on the natural process of evolution. Efforts to apply this innovative approach to artificial intelligence have also evolved over the years, and the advent of fast desktop computers capable of solving complex computational problems has spawned an explosion of interest in the field. Offering the unique perspective of one of the inventors of evolutionary programming, this remarkable work traces forty years of developments in the field. Dr. Fogel consolidates a wealth of information and hard-to-find figures from across the literature, providing comprehensive coverage of the evolutionary programming approach to simulated evolution. This includes both an updated, condensed version of his bestselling 1966 work, Artificial Intelligence Through Simulated Evolution (with Owens and Walsh), and a thorough discussion of the history, technology, and methods of machine learning from 1970 to the present. This important resource features clear, up-to-date explanations of how the simulation of evolutionary processes allows machines to learn to solve new problems in new ways. And it helps readers make the leap to generating intelligent systems-extending the discussion to neural networks, fuzzy logic, and genetic algorithms development. Engineers and computer scientists in all areas of machine learning will gain invaluable insight into existing and emerging applications and obtain ample ideas to draw upon in future research.

Download or read book Hands On Exploratory Data Analysis with Python written by Suresh Kumar Mukhiya and published by Packt Publishing Ltd. This book was released on 2020-03-27 with total page 342 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover techniques to summarize the characteristics of your data using PyPlot, NumPy, SciPy, and pandas Key FeaturesUnderstand the fundamental concepts of exploratory data analysis using PythonFind missing values in your data and identify the correlation between different variablesPractice graphical exploratory analysis techniques using Matplotlib and the Seaborn Python packageBook Description Exploratory Data Analysis (EDA) is an approach to data analysis that involves the application of diverse techniques to gain insights into a dataset. This book will help you gain practical knowledge of the main pillars of EDA - data cleaning, data preparation, data exploration, and data visualization. You’ll start by performing EDA using open source datasets and perform simple to advanced analyses to turn data into meaningful insights. You’ll then learn various descriptive statistical techniques to describe the basic characteristics of data and progress to performing EDA on time-series data. As you advance, you’ll learn how to implement EDA techniques for model development and evaluation and build predictive models to visualize results. Using Python for data analysis, you’ll work with real-world datasets, understand data, summarize its characteristics, and visualize it for business intelligence. By the end of this EDA book, you’ll have developed the skills required to carry out a preliminary investigation on any dataset, yield insights into data, present your results with visual aids, and build a model that correctly predicts future outcomes. What you will learnImport, clean, and explore data to perform preliminary analysis using powerful Python packagesIdentify and transform erroneous data using different data wrangling techniquesExplore the use of multiple regression to describe non-linear relationshipsDiscover hypothesis testing and explore techniques of time-series analysisUnderstand and interpret results obtained from graphical analysisBuild, train, and optimize predictive models to estimate resultsPerform complex EDA techniques on open source datasetsWho this book is for This EDA book is for anyone interested in data analysis, especially students, statisticians, data analysts, and data scientists. The practical concepts presented in this book can be applied in various disciplines to enhance decision-making processes with data analysis and synthesis. Fundamental knowledge of Python programming and statistical concepts is all you need to get started with this book.