Download or read book Bayesian Analysis of Spatially Structured Population Dynamics written by Qing Zhao and published by Springer Nature. This book was released on with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Download or read book Bayesian Analysis of Spatially Structured Population Dynamics written by Qing Zhao and published by Springer. This book was released on 2024-10-06 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book introduces a series of state-of-art Bayesian models that can be used to understand and predict spatially structured population dynamics in our changing world. Several chapters are devoted to introducing models that utilize detection/non-detection data, count data, combined count and capture-recapture data, and spatial capture-recapture data, respectively. The book provides R code of Metropolis-Hastings algorithms that allow efficient computing of these complex models. The book is aimed at graduate students and researchers who are interested in using and further developing these models.

Download or read book Applied Statistical Modelling for Ecologists written by Marc Kéry and published by Elsevier. This book was released on 2024-07-18 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applied Statistical Modelling for Ecologists provides a gentle introduction to the essential models of applied statistics: linear models, generalized linear models, mixed and hierarchical models. All models are fit with both a likelihood and a Bayesian approach, using several powerful software packages widely used in research publications: JAGS, NIMBLE, Stan, and TMB. In addition, the foundational method of maximum likelihood is explained in a manner that ecologists can really understand. This book is the successor of the widely used Introduction to WinBUGS for Ecologists (Kéry, Academic Press, 2010). Like its parent, it is extremely effective for both classroom use and self-study, allowing students and researchers alike to quickly learn, understand, and carry out a very wide range of statistical modelling tasks. The examples in Applied Statistical Modelling for Ecologists come from ecology and the environmental sciences, but the underlying statistical models are very widely used by scientists across many disciplines. This book will be useful for anybody who needs to learn and quickly become proficient in statistical modelling, with either a likelihood or a Bayesian focus, and in the model-fitting engines covered, including the three latest packages NIMBLE, Stan, and TMB. - Contains a concise and gentle introduction to probability and applied statistics as needed in ecology and the environmental sciences - Covers the foundations of modern applied statistical modelling - Gives a comprehensive, applied introduction to what currently are the most widely used and most exciting, cutting-edge model fitting software packages: JAGS, NIMBLE, Stan, and TMB - Provides a highly accessible applied introduction to the two dominant methods of fitting parametric statistical models: maximum likelihood and Bayesian posterior inference - Details the principles of model building, model checking and model selection - Adopts a "Rosetta Stone" approach, wherein understanding of one software, and of its associated language, will be greatly enhanced by seeing the analogous code in other engines - Provides all code available for download for students, at https://www.elsevier.com/books-and-journals/book-companion/9780443137150

Download or read book Structured Population Models in Marine Terrestrial and Freshwater Systems written by Shripad Tuljapurkar and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 644 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the summer of 1993, twenty-six graduate and postdoctoral stu dents and fourteen lecturers converged on Cornell University for a summer school devoted to structured-population models. This school was one of a series to address concepts cutting across the traditional boundaries separating terrestrial, marine, and freshwa ter ecology. Earlier schools resulted in the books Patch Dynamics (S. A. Levin, T. M. Powell & J. H. Steele, eds., Springer-Verlag, Berlin, 1993) and Ecological Time Series (T. M. Powell & J. H. Steele, eds., Chapman and Hall, New York, 1995); a book on food webs is in preparation. Models of population structure (differences among individuals due to age, size, developmental stage, spatial location, or genotype) have an important place in studies of all three kinds of ecosystem. In choosing the participants and lecturers for the school, we se lected for diversity-biologists who knew some mathematics and mathematicians who knew some biology, field biologists sobered by encounters with messy data and theoreticians intoxicated by the elegance of the underlying mathematics, people concerned with long-term evolutionary problems and people concerned with the acute crises of conservation biology. For four weeks, these perspec tives swirled in discussions that started in the lecture hall and carried on into the sweltering Ithaca night. Diversity mayor may not increase stability, but it surely makes things interesting.

Download or read book Applied Environmental Genomics written by Oliver F... Berry and published by CSIRO PUBLISHING. This book was released on 2023-12 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: DNA is the essence of life and the original ‘big data’. New technologies are allowing scientists to access and make sense of this information like never before, and they are using it to solve the world’s greatest environmental challenges. Applied Environmental Genomics synthesises the latest and most exciting uses of genomic technologies for environmental science and management. With an emphasis on diversity of applications and real-world demonstrations, leading researchers have contributed detailed chapters on innovative approaches to obtaining critical management-relevant information about the natural world. These chapters are complemented by perspective sections written by environmental managers who describe their experiences using genomics to support evidence-based decisions. Ideal for students, researchers and professionals working in natural resource management and policy, Applied Environmental Genomics is a comprehensive introduction to a fast-moving field that is transforming the practice of environmental management, with profound relevance to industry, government and the public.

Download or read book Demographic Methods Across the Tree of Life written by Roberto Salguero-Gomez and published by Oxford University Press. This book was released on 2021 with total page 401 pages. Available in PDF, EPUB and Kindle. Book excerpt: Demography is everywhere in our lives: from birth to death. Indeed, the universal currencies of survival, development, reproduction, and recruitment shape the performance of all species, from microbes to humans. The number of techniques for demographic data acquisition and analyses across the entire tree of life (microbes, fungi, plants, and animals) has drastically increased in recent decades. These developments have been partially facilitated by the advent of technologies such as GIS and drones, as well as analytical methods including Bayesian statistics and high-throughput molecular analyses. However, despite the universality of demography and the significant research potential that could emerge from unifying: (i) questions across taxa, (ii) data collection protocols, and (iii) analytical tools, demographic methods to date have remained taxonomically siloed and methodologically disintegrated. This is the first book to attempt a truly unified approach to demography and population ecology in order to address a wide range of questions in ecology, evolution, and conservation biology across the entire spectrum of life. This novel book provides the reader with the fundamentals of data collection, model construction, analyses, and interpretation across a wide repertoire of demographic techniques and protocols. It introduces the novice demographer to a broad range of demographic methods, including abundance-based models, life tables, matrix population models, integral projection models, integrated population models, individual based models, and more. Through the careful integration of data collection methods, analytical approaches, and applications, clearly guided throughout with fully reproducible R scripts, the book provides an up-to-date and authoritative overview of the most popular and effective demographic tools. Demographic Methods across the Tree of Life is aimed at graduate students and professional researchers in the fields of demography, ecology, animal behaviour, genetics, evolutionary biology, mathematical biology, and wildlife management.

Download or read book Hierarchical Modeling and Inference in Ecology written by J. Andrew Royle and published by Elsevier. This book was released on 2008-10-15 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: A guide to data collection, modeling and inference strategies for biological survey data using Bayesian and classical statistical methods.This book describes a general and flexible framework for modeling and inference in ecological systems based on hierarchical models, with a strict focus on the use of probability models and parametric inference. Hierarchical models represent a paradigm shift in the application of statistics to ecological inference problems because they combine explicit models of ecological system structure or dynamics with models of how ecological systems are observed. The principles of hierarchical modeling are developed and applied to problems in population, metapopulation, community, and metacommunity systems. The book provides the first synthetic treatment of many recent methodological advances in ecological modeling and unifies disparate methods and procedures.The authors apply principles of hierarchical modeling to ecological problems, including * occurrence or occupancy models for estimating species distribution* abundance models based on many sampling protocols, including distance sampling* capture-recapture models with individual effects* spatial capture-recapture models based on camera trapping and related methods* population and metapopulation dynamic models* models of biodiversity, community structure and dynamics - Wide variety of examples involving many taxa (birds, amphibians, mammals, insects, plants) - Development of classical, likelihood-based procedures for inference, as well as Bayesian methods of analysis - Detailed explanations describing the implementation of hierarchical models using freely available software such as R and WinBUGS - Computing support in technical appendices in an online companion web site

Download or read book Bringing Bayesian Models to Life written by Mevin B. Hooten and published by CRC Press. This book was released on 2019-05-15 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models. Features: R code implementing algorithms to fit Bayesian models using real and simulated data examples. A comprehensive review of statistical models commonly used in ecological and environmental science. Overview of Bayesian computational methods such as importance sampling, MCMC, and HMC. Derivations of the necessary components to construct statistical algorithms from scratch. Bringing Bayesian Models to Life contains a comprehensive treatment of models and associated algorithms for fitting the models to data. We provide detailed and annotated R code in each chapter and apply it to fit each model we present to either real or simulated data for instructional purposes. Our code shows how to create every result and figure in the book so that readers can use and modify it for their own analyses. We provide all code and data in an organized set of directories available at the authors' websites.

Download or read book Population Ecology in Practice written by Dennis L. Murray and published by John Wiley & Sons. This book was released on 2020-02-10 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: A synthesis of contemporary analytical and modeling approaches in population ecology The book provides an overview of the key analytical approaches that are currently used in demographic, genetic, and spatial analyses in population ecology. The chapters present current problems, introduce advances in analytical methods and models, and demonstrate the applications of quantitative methods to ecological data. The book covers new tools for designing robust field studies; estimation of abundance and demographic rates; matrix population models and analyses of population dynamics; and current approaches for genetic and spatial analysis. Each chapter is illustrated by empirical examples based on real datasets, with a companion website that offers online exercises and examples of computer code in the R statistical software platform. Fills a niche for a book that emphasizes applied aspects of population analysis Covers many of the current methods being used to analyse population dynamics and structure Illustrates the application of specific analytical methods through worked examples based on real datasets Offers readers the opportunity to work through examples or adapt the routines to their own datasets using computer code in the R statistical platform Population Ecology in Practice is an excellent book for upper-level undergraduate and graduate students taking courses in population ecology or ecological statistics, as well as established researchers needing a desktop reference for contemporary methods used to develop robust population assessments.

Download or read book Landscape Genetics written by Niko Balkenhol and published by John Wiley & Sons. This book was released on 2015-11-09 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: LANDSCAPE GENETICS: CONCEPTS, METHODS, APPLICATIONS LANDSCAPE GENETICS: CONCEPTS, METHODS, APPLICATIONS Edited by Niko Balkenhol, Samuel A. Cushman, Andrew T. Storfer, Lisette P. Waits Landscape genetics is an exciting and rapidly growing field, melding methods and theory from landscape ecology and population genetics to address some of the most challenging and urgent ecological and evolutionary topics of our time. Landscape genetic approaches now enable researchers to study in detail how environmental complexity in space and time affect gene flow, genetic drift, and local adaptation. However, learning about the concepts and methods underlying the field remains challenging due to the highly interdisciplinary nature of the field, which relies on topics that have traditionally been treated separately in classes and textbooks. In this edited volume, some of the leading experts in landscape genetics provide the first comprehensive introduction to underlying concepts, commonly used methods, and current and future applications of landscape genetics. Consistent with the interdisciplinary nature of the field, the book includes textbook-like chapters that synthesize fundamental concepts and methods underlying landscape genetics (Part 1), chapters on advanced topics that deserve a more in-depth treatment (Part 2), and chapters illustrating the use of concepts and methods in empirical applications (Part 3). Aimed at beginning landscape geneticists and experienced researchers alike, this book will be helpful for all scientists and practitioners interested in learning, teaching, and applying landscape genetics.

Download or read book Spatial Analysis written by Mark R. T. Dale and published by Cambridge University Press. This book was released on 2014-09-11 with total page 453 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nowadays, ecologists worldwide recognize the use of spatial analysis as essential. However, because of the fast-growing range of methods available, even an expert might occasionally find it challenging to choose the most appropriate one. Providing the ecological and statistical foundations needed to make the right decision, this second edition builds and expands upon the previous one by: • Encompassing the basic methods for spatial analysis, for both complete census and sample data • Investigating updated treatments of spatial autocorrelation and spatio-temporal analysis • Introducing detailed explanations of currently developing approaches, including spatial and spatio-temporal graph theory, scan statistics, fibre process analysis, and Hierarchical Bayesian analysis • Offering practical advice for specific circumstances, such as how to analyze forest Permanent Sample Plot data and how to proceed with transect data when portions of the data series are missing. Written for graduates, researchers and professionals, this book will be a valuable source of reference for years to come.

Download or read book Foundations of Restoration Ecology written by Society for Ecological Restoration International and published by Island Press. This book was released on 2016-11 with total page 580 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Society for Ecological Restoration"--Cover.

Download or read book Spatial Ecology and Conservation Modeling written by Robert Fletcher and published by Springer. This book was released on 2019-02-15 with total page 531 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a foundation for modern applied ecology. Much of current ecology research and conservation addresses problems across landscapes and regions, focusing on spatial patterns and processes. This book is aimed at teaching fundamental concepts and focuses on learning-by-doing through the use of examples with the software R. It is intended to provide an entry-level, easily accessible foundation for students and practitioners interested in spatial ecology and conservation.

Download or read book Analysis of Capture Recapture Data written by Rachel S. McCrea and published by CRC Press. This book was released on 2014-08-01 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt: An important first step in studying the demography of wild animals is to identify the animals uniquely through applying markings, such as rings, tags, and bands. Once the animals are encountered again, researchers can study different forms of capture-recapture data to estimate features, such as the mortality and size of the populations. Capture-recapture methods are also used in other areas, including epidemiology and sociology. With an emphasis on ecology, Analysis of Capture-Recapture Data covers many modern developments of capture-recapture and related models and methods and places them in the historical context of research from the past 100 years. The book presents both classical and Bayesian methods. A range of real data sets motivates and illustrates the material and many examples illustrate biometry and applied statistics at work. In particular, the authors demonstrate several of the modeling approaches using one substantial data set from a population of great cormorants. The book also discusses which computer programs to use for implementing the models and contains 130 exercises that extend the main material. The data sets, computer programs, and other ancillaries are available at www.capturerecapture.co.uk. The book is accessible to advanced undergraduate and higher-level students, quantitative ecologists, and statisticians. It helps readers understand model formulation and applications, including the technicalities of model diagnostics and checking.

Download or read book Population in the Human Sciences written by Philip Kreager and published by Oxford University Press, USA. This book was released on 2015 with total page 641 pages. Available in PDF, EPUB and Kindle. Book excerpt: Addresses the need for review and assessment of the framework of interdisciplinary population studies. It includes chapters on anthropology, archaeology, demography, ecology, epidemiology, geography, genomics, human biology, population genetics, social and demographic history, the history of science, and social network analysis.

Download or read book Extinctions in Near Time written by Ross D.E. MacPhee and published by Springer Science & Business Media. This book was released on 2013-11-09 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Near time" -an interval that spans the last 100,000 years or so of earth history-qualifies as a remarkable period for many reasons. From an anthropocentric point of view, the out standing feature of near time is the fact that the evolution, cultural diversification, and glob al spread of Homo sapiens have all occurred within it. From a wider biological perspective, however, the hallmark of near time is better conceived of as being one of enduring, repeat ed loss. The point is important. Despite the sense of uniqueness implicit in phrases like "the biodiversity crisis," meant to convey the notion that the present bout of extinctions is by far the worst endured in recent times, substantial losses have occurred throughout near time. In the majority of cases, these losses occurred when, and only when, people began to ex pand across areas that had never before experienced their presence. Although the explana tion for these correlations in time and space may seem obvious, it is one thing to rhetori cally observe that there is a connection between humans and recent extinctions, and quite another to demonstrate it scientifically. How should this be done? Traditionally, the study of past extinctions has fallen largely to researchers steeped in such disciplines as paleontology, systematics, and paleoecology. The evaluation of future losses, by contrast, has lain almost exclusively within the domain of conservation biolo gists. Now, more than ever, there is opportunity for overlap and sharing of information.

Download or read book Models for Planning Wildlife Conservation in Large Landscapes written by Joshua Millspaugh and published by Academic Press. This book was released on 2011-04-28 with total page 736 pages. Available in PDF, EPUB and Kindle. Book excerpt: A single-resource volume of information on the most current and effective techniques of wildlife modeling, Models for Planning Wildlife Conservation in Large Landscapes is appropriate for students and researchers alike. The unique blend of conceptual, methodological, and application chapters discusses research, applications and concepts of modeling and presents new ideas and strategies for wildlife habitat models used in conservation planning. The book makes important contributions to wildlife conservation of animals in several ways: (1) it highlights historical and contemporary advancements in the development of wildlife habitat models and their implementation in conservation planning; (2) it provides practical advice for the ecologist conducting such studies; and (3) it supplies directions for future research including new strategies for successful studies.Intended to provide a recipe for successful development of wildlife habitat models and their implementation in conservation planning, the book could be used in studying wildlife habitat models, conservation planning, and management techniques. Additionally it may be a supplemental text in courses dealing with quantitative assessment of wildlife populations. Additionally, the length of the book would be ideal for graduate student seminar course.Using wildlife habitat models in conservation planning is of considerable interest to wildlife biologists. With ever tightening budgets for wildlife research and planning activities, there is a growing need to use computer methods. Use of simulation models represents the single best alternative. However, it is imperative that these techniques be described in a single source. Moreover, biologists should be made aware of alternative modeling techniques. It is also important that practical guidance be provided to biologists along with a demonstration of utility of these procedures. Currently there is little guidance in the wildlife or natural resource planning literature on how best to incorporate wildlife planning activities, particularly community-based approaches. Now is the perfect time for a synthestic publication that clearly outlines the concepts and available methods, and illustrates them. - Only single resource book of information not only on various wildlife modeling techniques, but also with practical guidance on the demonstrated utility of each based on real-world conditions. - Provides concepts, methods and applications for wildlife ecologists and others within a GIS context. - Written by a team of subject-area experts