Download or read book An Algorithmic Toolbox for Plant Phenotyping with 3D Point Clouds written by Illia Ziamtsov and published by . This book was released on 2022 with total page 92 pages. Available in PDF, EPUB and Kindle. Book excerpt: Developing automated methods to efficiently process large volumes of point cloud data remains a grand challenge for 3D plant phenotyping applications. Phenotyping is one of the key pre-cursors towards developing more efficient breeding strategies and improvement of crop yields. Using 3D point clouds for plant phenotyping helps to eliminate problems that are usually encountered by performing phenotyping with images. However, point clouds come with their own set of problems, which include registration errors, missing data, sensor noise, and scalability. Point clouds of plants also typically have problems related to "natural" noise caused by small features such as trichomes or natural shape irregularities; further, handling the diversity of organic structures observed across plant species is challenging. All these nuances need to be considered to ensure quality extraction of phenotyping traits. Here, we develop a collection of graph-theoretic and machine learning methods to tackle three primary challenges in plant phenotyping: leaf/branch classification, leaf counting, and branch skeletonization. For classification, we assess and validate the accuracy of our methods on a dataset of 54 3D shoot architectures representing multiple species, growth conditions, and developmental time-points. Using deep learning, we achieved 97.8% accuracy on classifying leaves versus branches; critically, we also demonstrate the robustness of our method to growth conditions and species that have not been trained on, which is important in practical applications but is often untested. For leaf counting, we developed an enhanced region growing algorithm to reduce over-segmentation; this method achieved 86.6% accuracy, outperforming prior methods developed for this problem. Finally, for branch skeletonization, we developed an enhanced tip detection technique that ran an order of magnitude faster and generated more precise skeleton architectures compared to prior methods. In addition, we improved the quality of angles produced by skeletonization. Overall, our improvements enable higher throughput and accurate extraction of phenotypic properties from 3D point cloud data. Finally, all the algorithmic methods presented in this thesis were packaged in a stand alone GUI application, called Plant3D (P3D).
Download or read book AI sensors and robotics in plant phenotyping and precision agriculture written by Yongliang Qiao and published by Frontiers Media SA. This book was released on 2022-12-27 with total page 367 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Advances in Visual Computing written by George Bebis and published by Springer Nature. This book was released on 2023-11-30 with total page 630 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume LNCS 14361 and 14362 constitutes the refereed proceedings of the, 16th International Symposium, ISVC 2023, in October 2023, held at Lake Tahoe, NV, USA. The 42 full papers and 13 poster papers were carefully reviewed and selected from 120 submissions. A total of 25 papers were also accepted for oral presentation in special tracks from 34 submissions. The following topical sections followed as: Part 1: ST: Biomedical Image Analysis Techniques for Cancer Detection, Diagnosis and Management; Visualization; Video Analysis and Event Recognition; ST: Innovations in Computer Vision & Machine Learning for Critical & Civil Infrastructures; ST: Generalization in Visual Machine Learning; Computer Graphics; Medical Image Analysis; Biometrics; Autonomous Anomaly Detection in Images; ST: Artificial Intelligence in Aerial and Orbital Imagery; ST: Data Gathering, Curation, and Generation for Computer Vision and Robotics in Precision Agriculture. Part 2: Virtual Reality; Segmentation; Applications; Object Detection and Recognition; Deep Learning; Poster.
Download or read book Towards Autonomous Robotic Systems written by Fumiya Iida and published by Springer Nature. This book was released on 2023-09-07 with total page 506 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 24th Annual Conference Towards Autonomous Robotic Systems, TAROS 2023, held in Cambridge, UK, during September 13–15, 2023. The 40 full papers presented in this book were carefully reviewed and selected from 70 submissions. They cover a wide range of different topics such as: agri-food robotics; autonomy; collaborative and service robotics; locomotion and manipulation; machine vision; multi-robot systems; soft robotics; tactile sensing; and teleoperation.
Download or read book Morphological Plant Modeling Unleashing Geometric and Topological Potential within the Plant Sciences written by Alexander Bucksch and published by Frontiers Media SA. This book was released on 2017-10-13 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: An increasing population faces the growing demand for agricultural products and accurate global climate models that account for individual plant morphologies to predict favorable human habitat. Both demands are rooted in an improved understanding of the mechanistic origins of plant development. Such understanding requires geometric and topological descriptors to characterize the phenotype of plants and its link to genotypes. However, the current plant phenotyping framework relies on simple length and diameter measurements, which fail to capture the exquisite architecture of plants. The Research Topic “Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences” is the result of a workshop held at National Institute for Mathematical and Biological Synthesis (NIMBioS) in Knoxville, Tennessee. From 2.-4. September 2015 over 40 scientists from mathematics, computer science, engineering, physics and biology came together to set new frontiers in combining plant phenotyping with recent results from shape theory at the interface of geometry and topology. In doing so, the Research Topic synthesizes the views from multiple disciplines to reveal the potential of new mathematical concepts to analyze and quantify the relationship between morphological plant features. As such, the Research Topic bundles examples of new mathematical techniques including persistent homology, graph-theory, and shape statistics to tackle questions in crop breeding, developmental biology, and vegetation modeling. The challenge to model plant morphology under field conditions is a central theme of the included papers to address the problems of climate change and food security, that require the integration of plant biology and mathematics from geometry and topology research applied to imaging and simulation techniques. The introductory white paper written by the workshop participants identifies future directions in research, education and policy making to integrate biological and mathematical approaches and to strengthen research at the interface of both disciplines.
Download or read book Morphological Image Analysis written by Pierre Soille and published by Springer Science & Business Media. This book was released on 2013-03-14 with total page 322 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is self-contained in the sense that it is accessible to engineers, scientists, and practitioners having no prior experience with morphology. In addition, most necessary background notions about digital image processing are covered. The emphasis being put on the techniques useful for solving practical problems rather than the theory underlying mathematical morphology, no special knowledge about set theory and topology is required. Nevertheless, the book goes well beyond an introduction to mathematical morphology. Indeed, starting from the fundamental transformations, more elaborate methods which have proven their practical usefulness are explained. This is achieved through a step by step process pursued until the most recent advances.
Download or read book High Throughput Crop Phenotyping written by Jianfeng Zhou and published by Springer Nature. This book was released on 2021-07-17 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of the innovations in crop phenotyping using emerging technologies, i.e., high-throughput crop phenotyping technology, including its concept, importance, breakthrough and applications in different crops and environments. Emerging technologies in sensing, machine vision and high-performance computing are changing the world beyond our imagination. They are also becoming the most powerful driver of the innovation in agriculture technology, including crop breeding, genetics and management. It includes the state of the art of technologies in high-throughput phenotyping, including advanced sensors, automation systems, ground-based or aerial robotic systems. It also discusses the emerging technologies of big data processing and analytics, such as advanced machine learning and deep learning technologies based on high-performance computing infrastructure. The applications cover different organ levels (root, shoot and seed) of different crops (grains, soybean, maize, potato) at different growth environments (open field and controlled environments). With the contribution of more than 20 world-leading researchers in high-throughput crop phenotyping, the authors hope this book provides readers the needed information to understand the concept, gain the insides and create the innovation of high-throughput phenotyping technology.
Download or read book 3D Imaging Analysis and Applications written by Yonghuai Liu and published by Springer Nature. This book was released on 2020-09-11 with total page 736 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook is designed for postgraduate studies in the field of 3D Computer Vision. It also provides a useful reference for industrial practitioners; for example, in the areas of 3D data capture, computer-aided geometric modelling and industrial quality assurance. This second edition is a significant upgrade of existing topics with novel findings. Additionally, it has new material covering consumer-grade RGB-D cameras, 3D morphable models, deep learning on 3D datasets, as well as new applications in the 3D digitization of cultural heritage and the 3D phenotyping of crops. Overall, the book covers three main areas: ● 3D imaging, including passive 3D imaging, active triangulation 3D imaging, active time-of-flight 3D imaging, consumer RGB-D cameras, and 3D data representation and visualisation; ● 3D shape analysis, including local descriptors, registration, matching, 3D morphable models, and deep learning on 3D datasets; and ● 3D applications, including 3D face recognition, cultural heritage and 3D phenotyping of plants. 3D computer vision is a rapidly advancing area in computer science. There are many real-world applications that demand high-performance 3D imaging and analysis and, as a result, many new techniques and commercial products have been developed. However, many challenges remain on how to analyse the captured data in a way that is sufficiently fast, robust and accurate for the application. Such challenges include metrology, semantic segmentation, classification and recognition. Thus, 3D imaging, analysis and their applications remain a highly-active research field that will continue to attract intensive attention from the research community with the ultimate goal of fully automating the 3D data capture, analysis and inference pipeline.
Download or read book Consumer Depth Cameras for Computer Vision written by Andrea Fossati and published by Springer Science & Business Media. This book was released on 2012-10-04 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: The potential of consumer depth cameras extends well beyond entertainment and gaming, to real-world commercial applications. This authoritative text reviews the scope and impact of this rapidly growing field, describing the most promising Kinect-based research activities, discussing significant current challenges, and showcasing exciting applications. Features: presents contributions from an international selection of preeminent authorities in their fields, from both academic and corporate research; addresses the classic problem of multi-view geometry of how to correlate images from different viewpoints to simultaneously estimate camera poses and world points; examines human pose estimation using video-rate depth images for gaming, motion capture, 3D human body scans, and hand pose recognition for sign language parsing; provides a review of approaches to various recognition problems, including category and instance learning of objects, and human activity recognition; with a Foreword by Dr. Jamie Shotton.
Download or read book Precision Agriculture 19 written by John V. Stafford and published by Brill Wageningen Academic. This book was released on 2019 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Precision agriculture is a reality in agriculture and is playing a key role as the industry comes to terms with the environment, market forces, quality requirements, traceability, vehicle guidance and crop management. These proceedings contain reviewed papers presented at the 12th European Conference on Precision Agriculture. The papers reflect the wide range of disciplines that impinge on precision agriculture - technology, crop science, soil science, agronomy, information technology, decision support, remote sensing and others.
Download or read book Structure from Motion in the Geosciences written by Jonathan L. Carrivick and published by John Wiley & Sons. This book was released on 2016-07-15 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: Structure from Motion with Multi View Stereo provides hyperscale landform models using images acquired from standard compact cameras and a network of ground control points. The technique is not limited in temporal frequency and can provide point cloud data comparable in density and accuracy to those generated by terrestrial and airborne laser scanning at a fraction of the cost. It therefore offers exciting opportunities to characterise surface topography in unprecedented detail and, with multi-temporal data, to detect elevation, position and volumetric changes that are symptomatic of earth surface processes. This book firstly places Structure from Motion in the context of other digital surveying methods and details the Structure from Motion workflow including available software packages and assessments of uncertainty and accuracy. It then critically reviews current usage of Structure from Motion in the geosciences, provides a synthesis of recent validation studies and looks to the future by highlighting opportunities arising from developments in allied disciplines. This book will appeal to academics, students and industry professionals because it balances technical knowledge of the Structure from Motion workflow with practical guidelines for image acquisition, image processing and data quality assessment and includes case studies that have been contributed by experts from around the world.
Download or read book Bioanalytical Tools in Water Quality Assessment written by Beate Escher and published by IWA Publishing. This book was released on 2011-12-15 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: Part of Water Quality Set - Buy all four books and save over 30% on buying separately! Bioanalytical Tools in Water Quality Assessment reviews the application of bioanalytical tools to the assessment of water quality including surveillance monitoring. The types of water included range from wastewater to drinking water, including recycled water, as well as treatment processes and advanced water treatment. Bioanalytical Tools in Water Quality Assessment not only demonstrates applications but also fills in the background knowledge in toxicology/ecotoxicology needed to appreciate these applications. Each chapter summarises fundamental material in a targeted way so that information can be applied to better understand the use of bioanalytical tools in water quality assessment. Bioanalytical tools in Water Quality Assessment can be used by lecturers teaching academic and professional courses and also by risk assessors, regulators, experts, consultants, researchers and managers working in the water sector. It can also be a reference manual for environmental engineers, analytical chemists, and toxicologists. Authors: Beate Escher, National Research Centre for Environmental Toxicology (EnTox), The University of Queensland, Australia, Frederic Leusch, Smart Water Research Facility (G51), Griffith University Gold Coast Campus, Australia. With contributions by Heather Chapman and Anita Poulsen
Download or read book Seamless R and C Integration with Rcpp written by Dirk Eddelbuettel and published by Springer Science & Business Media. This book was released on 2013-06-04 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: Rcpp is the glue that binds the power and versatility of R with the speed and efficiency of C++. With Rcpp, the transfer of data between R and C++ is nearly seamless, and high-performance statistical computing is finally accessible to most R users. Rcpp should be part of every statistician's toolbox. -- Michael Braun, MIT Sloan School of Management "Seamless R and C++ integration with Rcpp" is simply a wonderful book. For anyone who uses C/C++ and R, it is an indispensable resource. The writing is outstanding. A huge bonus is the section on applications. This section covers the matrix packages Armadillo and Eigen and the GNU Scientific Library as well as RInside which enables you to use R inside C++. These applications are what most of us need to know to really do scientific programming with R and C++. I love this book. -- Robert McCulloch, University of Chicago Booth School of Business Rcpp is now considered an essential package for anybody doing serious computational research using R. Dirk's book is an excellent companion and takes the reader from a gentle introduction to more advanced applications via numerous examples and efficiency enhancing gems. The book is packed with all you might have ever wanted to know about Rcpp, its cousins (RcppArmadillo, RcppEigen .etc.), modules, package development and sugar. Overall, this book is a must-have on your shelf. -- Sanjog Misra, UCLA Anderson School of Management The Rcpp package represents a major leap forward for scientific computations with R. With very few lines of C++ code, one has R's data structures readily at hand for further computations in C++. Hence, high-level numerical programming can be made in C++ almost as easily as in R, but often with a substantial speed gain. Dirk is a crucial person in these developments, and his book takes the reader from the first fragile steps on to using the full Rcpp machinery. A very recommended book! -- Søren Højsgaard, Department of Mathematical Sciences, Aalborg University, Denmark "Seamless R and C ++ Integration with Rcpp" provides the first comprehensive introduction to Rcpp. Rcpp has become the most widely-used language extension for R, and is deployed by over one-hundred different CRAN and BioConductor packages. Rcpp permits users to pass scalars, vectors, matrices, list or entire R objects back and forth between R and C++ with ease. This brings the depth of the R analysis framework together with the power, speed, and efficiency of C++. Dirk Eddelbuettel has been a contributor to CRAN for over a decade and maintains around twenty packages. He is the Debian/Ubuntu maintainer for R and other quantitative software, edits the CRAN Task Views for Finance and High-Performance Computing, is a co-founder of the annual R/Finance conference, and an editor of the Journal of Statistical Software. He holds a Ph.D. in Mathematical Economics from EHESS (Paris), and works in Chicago as a Senior Quantitative Analyst.
Download or read book Plant Roots written by Yoav Waisel and published by . This book was released on 1996 with total page 1064 pages. Available in PDF, EPUB and Kindle. Book excerpt: The third edition of a standard resource, this book offers a state-of-the-art, multi-disciplinary presentation of plant roots. It examines structure and development, assemblage of root systems, metabolism and growth, stressful environments, and interactions at the rhizosphere. Reflecting the explosion of advances and emerging technologies in the field, the book presents developments in the study of root origin, composition, formation, and behavior for the production of novel pharmaceutical and medicinal compounds, agrochemicals, dyes, flavors, and pesticides. It details breakthroughs in genetics, molecular biology, growth substance physiology, biotechnology, and biomechanics.
Download or read book Preparing for Future Products of Biotechnology written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2017-07-28 with total page 231 pages. Available in PDF, EPUB and Kindle. Book excerpt: Between 1973 and 2016, the ways to manipulate DNA to endow new characteristics in an organism (that is, biotechnology) have advanced, enabling the development of products that were not previously possible. What will the likely future products of biotechnology be over the next 5â€"10 years? What scientific capabilities, tools, and/or expertise may be needed by the regulatory agencies to ensure they make efficient and sound evaluations of the likely future products of biotechnology? Preparing for Future Products of Biotechnology analyzes the future landscape of biotechnology products and seeks to inform forthcoming policy making. This report identifies potential new risks and frameworks for risk assessment and areas in which the risks or lack of risks relating to the products of biotechnology are well understood.
Download or read book Image and Signal Processing written by Abderrahim El Moataz and published by Springer Nature. This book was released on 2020-07-08 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the refereed proceedings of the 9th International Conference on Image and Signal Processing, ICISP 2020, which was due to be held in Marrakesh, Morocco, in June 2020. The conference was cancelled due to the COVID-19 pandemic. The 40 revised full papers were carefully reviewed and selected from 84 submissions. The contributions presented in this volume were organized in the following topical sections: digital cultural heritage & color and spectral imaging; data and image processing for precision agriculture; machine learning application and innovation; biomedical imaging; deep learning and applications; pattern recognition; segmentation and retrieval; mathematical imaging & signal processing.
Download or read book Phenetics evolution Population Trait written by Alekseĭ Vladimirovich I͡Ablokov and published by Columbia University Press. This book was released on 1986 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt: This collection of short stories focuses on the Scottish civil war of 1644-45, in which the Marquis of Montrose led his royalist forces in a series of stunning victories against the odds before his final defeat at Philiphaugh. Each of Hogg's five tales centres on one of the five major battles of Montrose's brilliant but ultimately futile campaign. Each tale is utterly different from the others in genre and tone, but taken together they build up a composite picture of what it was like to experience the 'anarchy and confusion' of the time at first hand.
